Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05754 ATGCACCACAACCATTCCCTCCCATGGTTGTCGATTTTTGCTTTCCTCTCCTCAACCACTACCACCCTCCTCCTTGTTCAATGCAAAACCTCTTCTCAAGATGTTTCAGCCCTCAATGTTATGTACAAAAGCTTGAATTCTCCTTCCCAACTCAGTGGTTGGAAATCAACCGGTGGTGATCCTTGTGCTGAATCCTGGGAAGGAATCAAATGTTCTTCTTCTTCCGTCACAGAAATAAATTTAGCTGATATGGATCTTAGTGGATCAATGGGCTACCAATTGGCAAACTTGAAATCAGTCACCTACTTTGATTTGAGCAACAACAATTTCAATGGTGATATACCCTACCAACTCCCTCCAAATGCTCGTACCATAGATTTTTCTAACAATCAATTCACTGGAAGTATACCTTATTCCTTTTCTCAGATGAAGACTCTCGAATCTCTAAATCTTGCACATAATAAGCTCAATAACCAGCTGGGAGATATGTTTGCAAGCCTCTCTAAACTCAAACAATTGGATGTATCATTCAATTCACTATCAGGAGACCTGCCTCAGAGTTTAAAATCAGCCAAAAGCCTAACGAAGATACATCTGCAAAACAATAAACTCACCGGTTCAATAAATGTCCTTGCCCGCCTTCCACTTGATGATGTGAATGTTGAGAACAACAAATTTACTGGTTGGGTTCCTGACTCGTTAAAGGATATAACTAGCTTGAGAACGGGAGGAAACTCTTGGTCAACTGGGTCAGCACCACCTCCTCCCCCCGGCACACCTCCTATCGAGCATGCCAAGAAAAAGGCTGGAAAATCTGTTGTAACTGGAGTCACTATAGCCGGCATAGCTGTTGCTGTGCTCATTGTAGTCATACTCATTGTTGCTCTTTCTAAAAGACGAAGATCATCTGTACCTTCTTCACATTTTATTGATGAAGATAGGCGTAGCCAGCACAGATCTTTTACACCCCTTGCGTCTCAGGAGTTGTCTAAAGATTTAGGTTCTGATGACAGCACAAAATACAATGGATTTAAAGCAATGGATTCCACTGCAATCGACATAAAGGCATTACAAAAAAGTCCATCAAGTGGTGTTACATCAGCCTCTGATTGTGTGCAAACTTTTACTGACAATGAGTTTGCAAATCGTCTAAATTCTAAAAGAAGCGCATCAGTTCGATGTACTCCTTTTTCCCTGGGAGAGTTGCAAATTGGAACTGCTAATTTTGCTTCAGGACGACTTCTTGGTGAAGGAAACCTTGGACCTGTTTATCGTGCCAAATATGCCGATGGAAAGGTATTGGCTGTAAAAAAGATAAACCCTTCATTTTTTGATGGGGGTCGTCCTGAGGAATTCTCTCAGATTTTATCAAGCATCTCCAAACTTCGTCATCCAAATATTGCTGAGCTTGTTGGTTATTGTTCAGAACAGGAGCATATGTTAGTATATGATTATTTCAGAAATGGTTCTCTCCATGAGTTTTTACACTTATCAGATGACTTCAGCAAACCACTAACTTGGAACACCAGAATCAGAATTGCATTGGGAACTGCTCGGGCTGTTGAGTACCTACATGAAAGTTGTTCTCCGCCTTTAGTTCACAAGAATATCAAATCTGCCAATATTTTGCTCGACACAGATTTGAATCCCCGTCTCTCAGACTATGGTTTGGCAACCTTCCACCAGCGTACTAGCCAGAATCTCGGGGCAGGATATAATGCACCAGAATGCACAAAACCATCAGCCTATACCCTGAAGAGCGATGTATACAGTTTTGGCGTAGTGATGCTCGAGCTTTTGACAGGACGAATGCCTCTAGACAGTTCAAGGCCAAAAGGAGAGCAATGTCTGGTTCGTTGGGCTACCCCACAGCTTCATGACATACTTGCAGTGGAAAAAATGGTAGACCCTGCCTTGCGGGGACTTTACCCTCCTAAATCACTCTTTCGGTTTGCTGACATCATCGCCCTTTGTGTTCAGTCTGAACCTGAATTTCGGCCACCTGCGTCAGAGGTGGTTCAGGCATTGGTGCGATTAGTTCAACGTTCAAGTCTGAAAATGAGAGAAGATCTTGGTGTCTTTGGTCGGATAGATGATCCTGATGATTGA 2109 0.4258 MHHNHSLPWLSIFAFLSSTTTTLLLVQCKTSSQDVSALNVMYKSLNSPSQLSGWKSTGGDPCAESWEGIKCSSSSVTEINLADMDLSGSMGYQLANLKSVTYFDLSNNNFNGDIPYQLPPNARTIDFSNNQFTGSIPYSFSQMKTLESLNLAHNKLNNQLGDMFASLSKLKQLDVSFNSLSGDLPQSLKSAKSLTKIHLQNNKLTGSINVLARLPLDDVNVENNKFTGWVPDSLKDITSLRTGGNSWSTGSAPPPPPGTPPIEHAKKKAGKSVVTGVTIAGIAVAVLIVVILIVALSKRRRSSVPSSHFIDEDRRSQHRSFTPLASQELSKDLGSDDSTKYNGFKAMDSTAIDIKALQKSPSSGVTSASDCVQTFTDNEFANRLNSKRSASVRCTPFSLGELQIGTANFASGRLLGEGNLGPVYRAKYADGKVLAVKKINPSFFDGGRPEEFSQILSSISKLRHPNIAELVGYCSEQEHMLVYDYFRNGSLHEFLHLSDDFSKPLTWNTRIRIALGTARAVEYLHESCSPPLVHKNIKSANILLDTDLNPRLSDYGLATFHQRTSQNLGAGYNAPECTKPSAYTLKSDVYSFGVVMLELLTGRMPLDSSRPKGEQCLVRWATPQLHDILAVEKMVDPALRGLYPPKSLFRFADIIALCVQSEPEFRPPASEVVQALVRLVQRSSLKMREDLGVFGRIDDPDD 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05754 702 SUPERFAMILY Protein kinase-like (PK-like) 389 676 IPR011009 -
Vifa2g05754 702 Gene3D Phosphorylase Kinase; domain 1 368 485 - -
Vifa2g05754 702 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 486 690 - -
Vifa2g05754 702 Pfam Protein tyrosine and serine/threonine kinase 412 676 IPR001245 GO:0004672|GO:0006468
Vifa2g05754 702 MobiDBLite consensus disorder prediction 304 334 - -
Vifa2g05754 702 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 374 485 - -
Vifa2g05754 702 MobiDBLite consensus disorder prediction 304 319 - -
Vifa2g05754 702 SUPERFAMILY L domain-like 29 241 - -
Vifa2g05754 702 MobiDBLite consensus disorder prediction 241 267 - -
Vifa2g05754 702 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 31 258 - -
Vifa2g05754 702 ProSiteProfiles Protein kinase domain profile. 409 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g05754 702 Pfam Leucine rich repeat N-terminal domain 32 72 IPR013210 -
Vifa2g05754 702 Gene3D Ribonuclease Inhibitor 28 257 IPR032675 -
Vifa2g05754 702 Gene3D Transferase(Phosphotransferase) domain 1 486 693 - -
Vifa2g05754 702 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 76 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05754 Vifa-Chr2 1702032394 1702036364 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05754 18 702 Strubbelig Receptor Gene Family AT1G78980 61.032 0.0 850
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vifa2g05754 PK_Tyr_Ser-Thr 2.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05754 - - psat:127107173 1229.93