Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05749 ATGAAACTACAGGCACATATTCCAGGACAGATATCTGGACAGATGCCATCTTTAAGCGGTGTGTCAAGATCATCAAATAACATGGACCCTGAATTTCTTAGAGCACGAGCATTTATTCAAGAGAAGATCTGTGATGTGTTATTGCATCGGCATCCTCAGGCAGTTAATGATATGCAGAAAAGGAGGATTAAGGATCTTGCAAAACGCCTGGAGGAGGCCATGTTAAAAGCTGCTTCCTCTAAGGAGGACTACATGAACTTGGAAACACTAGAGAGTCGTTTATCTAGTTTCCTTCGACGGGCAACTATGAATAATCAAACCCAACAATATCCTCAGCTTATTGGCTCCTCTCCCATTGGTACAATGATACCAACCCCTGGTTTGTCGCATGGTCCAAATTCAAGCATGGGGGTTGCATCTTCTATAGATGCCTCAATGATATCTTCCAGCGGGGGTAATAGCATGGTATCAACATCTTTCAATAGTGTAAATATGTTACCACCTGGTGGCATGCTTGGCAGTTCCATAAATAGATCTGATGGTTTGTCAAATGGATATCAGCAGTCTTCTACCAACTTTTCCGTTGGCTCGGGAGGGAACATGTCATCAATGGGTGTGCCGAGAATTTCAAGCCAAATGATTCCTACGCCAGGATTTACCGTCAACAACAATCACTCACATATGAATGTAGATTCATCTTCTAACGGTAATATCTTTTCTAGTGCAGAGTCTACTATGGTATCACAGTCACAGCTGCTGCAGCAGAAACAGCATGTTGGAGACCAAAGTCATGTATTGTCGAACCTTGGCAGCCAAATGAGTAGTGGAATGAGATCTGGCACTTCTGATGGCTATGCCTCAACTTATGCTAATTCCCCTAAACACATGCATCAGCACTTTGACCAGAATCAGAAACCAGTAGTGCAGGGTGATGGATATGGATTGAATAATGTCGACCCTTTTGCTTCTGGAAACTTCTATGGATCTGTGGCATCTTCTGGGTCTATGATGAACACTCAGAACACAAATTCAGTAAAATTGTCATCTATACCCAAGACTAATTCATTGGTTAGCGGTCACTCAAATTTGCATGGTATGCAGCAGGCTGCTCATATGAAATCTCAAGCAGTCAATCAATTGGAAAAGTTTCAGTCTTCATCGACTTCAAGAGATGCCTTTCTGCATTCTCAACAACAGTATCAGCAAAGGCCCCAGCAATTTCAACAGCTAGAACAGTATTCACAATCACAGCAACAGTTTCAGTTGAAACTACATAGTCAGCAGCCTCAGCATTTGGTCAATGACGATGGTTTCAATCAGTCTCAGTTGTCTTCCAATCTAGAAAACCAAGTGAAGATAGAGCCTGGAATTGAACACGATAAAGAAGTGCTCAATTCTCATGTTCCTGAACAGTTCCATATGTCTGAGATGCAGAATCAGTTCCAGCAAAATTCCTCTGAAGATTGTTCTAGGAGTGCTCAATACCTTTCCTTTCCATCTGGTCAGCACGATTTATCGTCATCAGCACCTCAAAATTCGCAACAAATGTTGCATCCACACCAATTAGTTGCAGAATCTCAAAATAAGTTCAGCTGTCTTACAGTTGGTGCACAATCCAATTCTAAACCAGTAGTTCTAAACCAATGGCCTGACTCACAAGATGGTAACCACATGTCTAACAATATTTCACACGACCAGCATCTCCATGTGGATTTTCATCAAAGAATATCAGGAAAGGATGAAGCTCATTGCAATAACTTATCATCAGATGTATCTATGAGCCAAGCTGTTGCTCCTAGAGGCGCAGCTGATCCACCAGACCCAGGAAGTGATCTCAAAAATGCGCACAAAAATCAACAAAGGTGGCTCTTATTTCTACTTCATGCTCGACGATGTTCTGCTCCTGAAGGACGATGCCAAGAACGCTGTTGTTCTAGTGCACAGAATTTATGCAAGCACATAGATGGATGCACCCTAGGTCGTCATTGTCCATACCCGCGTTGTCATCATACTAGGGTATTGCTTCGTCATTTCATGCACTGCAAGGATCCGTGTTGCCCTGTTTGTGTTTTTGTAAGAAATTACCGGCGCGCATTTCAACTTAAAGCTCAGATTCAGCCAGAATCTCAATCAAGTTTGCCAAGTGTGGTAAATGGATCGTGTAAATCTTACAATATTACAGCTATGTCATCCAGATTGATCTCAAATCCTACATTAGTTGTGGAAACTTCAGAAGGCTTGCACCCATCTCTAAAACGCATAAAGATTGAGCATTGCACCCAATCTGTTAATCTTGAAAAGGATAATTCTGTTTCATCCTCTATTTCTGCAAATTGTGAATCTCTTGTTTCCAGGGATGCTCAGTCCCAAATCTATCCCAATGTAGAGAAGTCTATCTCAATTAAGTCTGAGCTTACAGAAGTAAAAGCAGAAGTTCAGTCTCATGCTAAGCTTAGCGATATGAAGATGGATTCCAATAATGTAGATAATAAAATTCCCAGTGGTGAGCCTGTCAAGAATGATGATCCTGGTAATTTAGCCAGGCCAGACAATATGAAAAATGAGAAAGAAATTGGGCAAGATAGGCAAGAAAATGTGACGCAGCACAGTGAAAATGCAGCTGGAACGAAGTCTGGTAAGCCAAAAATTAAGGGGGTCTCTTTAACTGAATTATTTACTCCAGAGCAAGTCCGGGAACATATTACTGGTCTCCGGCAATGGGTTGGCCAAAGCAAATCAAAGGCAGAGAAGAATCAAGCAATGGAGCATTCTATGAGTGAGAATTCTTGTCAATTATGTGCTGTTGAGAAGCTTACATTTGAACCGCCACCTATTTATTGCACAACATGTGGGGTTCGCATCAAACGGAACAATATGTACTATACCATGGGTACTGGTGATACTCGGCATTATTTTTGTATCCCATGCTATAATGATGCTCGTACAGAACACATTGTTGTTGATGGGACTCCCATCTCTAAGTCAAGATTGGAAAAGAAGAAGAATGATGAGGAAACTGAGGAATGGTGGGTTCAATGTGATAAATGCGAAGCTTGGCAACATCAAATATGTGCTTTGTTTAATGGAAGAAGAAATGATGGTGGACAAGCTGAATACACTTGCCCTAACTGCTACATTGAAGAGGTAGAGCGGGGTGAGCGCAAGCCATTACCCCAAAGTGCTGTTCTTGGAGCGAAGGATTTACCTAGAACTATTCTTAGCGATCATATAGAACAACGGTTGTTTAAGCGGCTAAAGCACGAAAGAACAGAGAGAGCAAGGTTTCATGGGAAAAGCTACGATGAGGTTCCTGGAGCTGATTCCCTAGTCGTAAGAGTTGTGTCTTCCGTTGACAAGAAGTTAGAAGTGAAACAGCGCTTTTTGGAAATTTTTCAGGAAGAAAATTACCCAACAGAATTTCCATACAAATCCAAGGTAGTTTTGCTGTTTCAAAAGATTGAAGGTGTGGAAGTATGCCTATTTGGCATGTATGTTCAAGAATTTGGAGCTGAATGTCAATTTCCCAATCAGCGCCGGGTGTATCTTTCATATCTGGACTCTGTGAAGTATTTCAGGCCCGAGGTTAAATCAGTAACTGGAGAGGCTCTTCGAACATTTGTTTACCATGAAATTCTGATTGGATACCTTGAATATTGTAAGCTGCGCGGTTTTACCAGCTGCTATATATGGGCCTGTCCTCCATTAAAGGGTGAAGACTATATTTTATATTGCCATCCAGAAATTCAGAAAACACCAAAATCTGACAAGCTTCGTGAATGGTATCTTGCCATGTTAAGAAAAGCTTCAAAGGAGAATGTTGTGGTGGATATCACCAACTTATATGATCATTTCTTCACATCTACTGGTGAATGTAGAGCTAAGGTTACAGCTTCCAGACTGCCATATTTTGATGGTGACTACTGGCCTGGGGCTGCAGAGGATTTGATTTATCAGCTACGCCAAGAGGAAGATGGAAGAAGACAAAATAAAAAGGGAACAACAAAAAAGACTATCACAAAAAGGGCCTTAAAAGCGTCTGGCCAGTCGGATCTTTCAGGAAATGCTTCGAAAGATCTGCTCCTCATGCACAAACTTGGTGAAACCATTTCTCCAATGAAGGAAGATTTTATTATGGTTCACTTGCAGCATGCATGTAGCCACTGCTGTATTCTAATGGTGTGTGGCAACCGTTGGGTTTGTAGTCAGTGCAAGAACTTTCAGATTTGTGATAAGTGTTATGAAGCAGAACTACAGCGTGAAGAGAGAGAAAGACATCCTGTTAATCAGAGAGAAAAACACACTCTTTATCCGGTTGAAATTACTGATATACCAGATGATACAAAGGATAAAGATGATATTCTTGAAAGTGAATTCTTCGACACTAGACAGGCATTTCTGAGTCTCTGCCAGGGAAATCATTACCAGTATGATACTTTAAGGCGGGCCAAGCATTCCTCAATGATGGTCCTATATCATCTTCATAATCCAACTGCTCCTGCATTTGTGGCCACTTGTAATGTATGCTATCTTGACATAGAAACTGGTCAAGGTTGGCGTTGTGAAGTTTGCCCAGAGTACGATGTATGCAATTCTTGTTATCAAAAGGGAGATATTGATCATCCTCATCCGTTGACAAATCACCCGTCAATGGTGGAACGTGATGCTCAGAACAAAGAAGCAAGGCAGTTTCGAGTATTGCAGCTAAGGAAAATGCTCGATCTTCTAGTGCATGCCTCCCAATGTCGTTCTGCACATTGCCAATATCCTAATTGTCGCAAAGTGAAGGGACTCTTCCGCCATGGTATGCACTGCAAAACACGTGCTTCCGGAGGCTGCGTTCTTTGCAAAAAAATGTGGTATTTGCTTCAGCTTCATGCTCGTGCATGCAAAGAATCAGAATGCCACGTGCCACGATGCAGAGATTTAAAAGAACATCTAAGGAGGCTGCAGCAGCAGTCTGATTCACGGCGAAGAGCTGCTGTAATGGAAATGATGAGGCAGAGAGCTGCTGAAGTTGCTAACAATGCTTGA 5031 0.4182 MKLQAHIPGQISGQMPSLSGVSRSSNNMDPEFLRARAFIQEKICDVLLHRHPQAVNDMQKRRIKDLAKRLEEAMLKAASSKEDYMNLETLESRLSSFLRRATMNNQTQQYPQLIGSSPIGTMIPTPGLSHGPNSSMGVASSIDASMISSSGGNSMVSTSFNSVNMLPPGGMLGSSINRSDGLSNGYQQSSTNFSVGSGGNMSSMGVPRISSQMIPTPGFTVNNNHSHMNVDSSSNGNIFSSAESTMVSQSQLLQQKQHVGDQSHVLSNLGSQMSSGMRSGTSDGYASTYANSPKHMHQHFDQNQKPVVQGDGYGLNNVDPFASGNFYGSVASSGSMMNTQNTNSVKLSSIPKTNSLVSGHSNLHGMQQAAHMKSQAVNQLEKFQSSSTSRDAFLHSQQQYQQRPQQFQQLEQYSQSQQQFQLKLHSQQPQHLVNDDGFNQSQLSSNLENQVKIEPGIEHDKEVLNSHVPEQFHMSEMQNQFQQNSSEDCSRSAQYLSFPSGQHDLSSSAPQNSQQMLHPHQLVAESQNKFSCLTVGAQSNSKPVVLNQWPDSQDGNHMSNNISHDQHLHVDFHQRISGKDEAHCNNLSSDVSMSQAVAPRGAADPPDPGSDLKNAHKNQQRWLLFLLHARRCSAPEGRCQERCCSSAQNLCKHIDGCTLGRHCPYPRCHHTRVLLRHFMHCKDPCCPVCVFVRNYRRAFQLKAQIQPESQSSLPSVVNGSCKSYNITAMSSRLISNPTLVVETSEGLHPSLKRIKIEHCTQSVNLEKDNSVSSSISANCESLVSRDAQSQIYPNVEKSISIKSELTEVKAEVQSHAKLSDMKMDSNNVDNKIPSGEPVKNDDPGNLARPDNMKNEKEIGQDRQENVTQHSENAAGTKSGKPKIKGVSLTELFTPEQVREHITGLRQWVGQSKSKAEKNQAMEHSMSENSCQLCAVEKLTFEPPPIYCTTCGVRIKRNNMYYTMGTGDTRHYFCIPCYNDARTEHIVVDGTPISKSRLEKKKNDEETEEWWVQCDKCEAWQHQICALFNGRRNDGGQAEYTCPNCYIEEVERGERKPLPQSAVLGAKDLPRTILSDHIEQRLFKRLKHERTERARFHGKSYDEVPGADSLVVRVVSSVDKKLEVKQRFLEIFQEENYPTEFPYKSKVVLLFQKIEGVEVCLFGMYVQEFGAECQFPNQRRVYLSYLDSVKYFRPEVKSVTGEALRTFVYHEILIGYLEYCKLRGFTSCYIWACPPLKGEDYILYCHPEIQKTPKSDKLREWYLAMLRKASKENVVVDITNLYDHFFTSTGECRAKVTASRLPYFDGDYWPGAAEDLIYQLRQEEDGRRQNKKGTTKKTITKRALKASGQSDLSGNASKDLLLMHKLGETISPMKEDFIMVHLQHACSHCCILMVCGNRWVCSQCKNFQICDKCYEAELQREERERHPVNQREKHTLYPVEITDIPDDTKDKDDILESEFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAFVATCNVCYLDIETGQGWRCEVCPEYDVCNSCYQKGDIDHPHPLTNHPSMVERDAQNKEARQFRVLQLRKMLDLLVHASQCRSAHCQYPNCRKVKGLFRHGMHCKTRASGGCVLCKKMWYLLQLHARACKESECHVPRCRDLKEHLRRLQQQSDSRRRAAVMEMMRQRAAEVANNA 1676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05749 1676 CDD PHD_HAC_like 972 1044 - -
Vifa2g05749 1676 SMART TAZ_2 613 692 IPR000197 -
Vifa2g05749 1676 SMART TAZ_2 1562 1640 IPR000197 -
Vifa2g05749 1676 SUPERFAMILY RING/U-box 1360 1434 - -
Vifa2g05749 1676 SUPERFAMILY RING/U-box 1481 1548 - -
Vifa2g05749 1676 PANTHER CBP/P300-RELATED 62 287 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vifa2g05749 1676 SMART KAT11_2 1095 1392 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vifa2g05749 1676 Pfam Zinc finger, ZZ type 1501 1542 IPR000433 GO:0008270
Vifa2g05749 1676 ProSitePatterns Zinc finger PHD-type signature. 973 1044 IPR019786 -
Vifa2g05749 1676 MobiDBLite consensus disorder prediction 595 614 - -
Vifa2g05749 1676 FunFam Histone acetyltransferase of the CBP family 12 1376 1435 - -
Vifa2g05749 1676 MobiDBLite consensus disorder prediction 1 24 - -
Vifa2g05749 1676 Pfam TAZ zinc finger 1569 1639 IPR000197 -
Vifa2g05749 1676 Pfam TAZ zinc finger 620 689 IPR000197 -
Vifa2g05749 1676 MobiDBLite consensus disorder prediction 478 512 - -
Vifa2g05749 1676 MobiDBLite consensus disorder prediction 816 882 - -
Vifa2g05749 1676 MobiDBLite consensus disorder prediction 1323 1350 - -
Vifa2g05749 1676 SMART zz_5 1379 1423 IPR000433 GO:0008270
Vifa2g05749 1676 SMART zz_5 1499 1544 IPR000433 GO:0008270
Vifa2g05749 1676 SUPERFAMILY TAZ domain 1561 1644 IPR035898 -
Vifa2g05749 1676 Gene3D - 1499 1550 IPR043145 -
Vifa2g05749 1676 Gene3D - 1376 1435 IPR043145 -
Vifa2g05749 1676 FunFam Histone acetyltransferase HAC1-like protein 1556 1673 - -
Vifa2g05749 1676 MobiDBLite consensus disorder prediction 271 300 - -
Vifa2g05749 1676 SUPERFAMILY TAZ domain 615 696 IPR035898 -
Vifa2g05749 1676 Coils Coil 56 83 - -
Vifa2g05749 1676 SUPERFAMILY FYVE/PHD zinc finger 1006 1046 IPR011011 -
Vifa2g05749 1676 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 1062 1498 IPR031162 GO:0004402
Vifa2g05749 1676 MobiDBLite consensus disorder prediction 10 24 - -
Vifa2g05749 1676 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 997 1045 IPR013083 -
Vifa2g05749 1676 ProSiteProfiles Zinc finger ZZ-type profile. 1380 1443 IPR000433 GO:0008270
Vifa2g05749 1676 Gene3D TAZ domain 609 697 IPR035898 -
Vifa2g05749 1676 MobiDBLite consensus disorder prediction 382 404 - -
Vifa2g05749 1676 MobiDBLite consensus disorder prediction 846 864 - -
Vifa2g05749 1676 ProSiteProfiles Zinc finger ZZ-type profile. 1500 1558 IPR000433 GO:0008270
Vifa2g05749 1676 ProSiteProfiles Zinc finger TAZ-type profile. 610 692 IPR000197 -
Vifa2g05749 1676 Gene3D TAZ domain 1556 1673 IPR035898 -
Vifa2g05749 1676 ProSitePatterns Zinc finger ZZ-type signature. 1505 1532 IPR000433 GO:0008270
Vifa2g05749 1676 Pfam PHD-finger 1003 1045 IPR019787 -
Vifa2g05749 1676 ProSiteProfiles Zinc finger TAZ-type profile. 1559 1642 IPR000197 -
Vifa2g05749 1676 Pfam Histone acetylation protein 1103 1324 IPR013178 GO:0004402|GO:0006355|GO:0016573
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05749 Vifa-Chr2 1700163080 1700174511 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Vifa2g05749 HAT_KAT11 8.1e-31 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05749 K04498 - gmx:100787114 2772.27