Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa2g05735 | ATGACTACCTCCCCCAACGGCCATCTCACAGTCAACATCGCCACCGGTCATCATGACAACGACGACAACAACAACGCTCCACCTCCTTCTGATAACAACAATCAGCATGATAATCACGATGACGACGACGAACTCATCGATCCTGATGATCCTTTCGATATCACTCAAACGAAGAATGCTTCGCACGAGACTCTTCGCCGTTGGAGACAAGCAGCACTGGTGCTCAATGCTTCCAGGCGTTTTAGATATACACTGGACTTCAAAGGGGAAGAAGAAAAACAGCAAAAGAAGAGCTTAATTAGAGCCCATGCACAAGTCATAAGAGCTGCACTGCTTTTTAGATTGGCCGGTGAACGTGAACTAGTGATAAGTCCAGCAGCTACACCCCCACATCAAACTTCAGTTGGTGACTATGGAGTTGGGTTAGAAGAACTTGCTTCAATGTCTAAAGATCAGAATATTTCTGCTTTACAGCAATTAGGAGGGGTTAAAGGCATATCAAATTTACTAAAGTCAAATCCAGATAAAGGAATTAGTGGAGATGATGATGATCTATTGAAAAGGAAAAATGCATTTGGAACTAATACATATCCTCGGAAAAAAGGGAGAAGTTTTTGGAGGTTTTTATGGGAGGCTTGGCAAGATCTGACTCTCATAATATTGATTATAGCTGCTGCAGTGTCATTGGTACTTGGAATAAAAACAGAGGGTTTGAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTTTACTTGTTATTGTAGTAACAGCTGTCAGTGATTATCGACAATCTCTGCAATTTCAGAATTTGAATGCAGAGAAACAAAATATACAATTAGAGATCATTAGAAGTGGAAGAACAATTAAAATATCAATATTTGATATTGTTGTCGGTGATGTTATACCCCTTAAAATAGGAGATCAGGTTCCTGCCGACGGAGTATTAATCGTAGGTCACTCTCTTGCAATTGATGAATCCAGTATGACTGGTGAAAGCAAAATTGTTCATAAGGATCACAAAGCGCCCTTTTTTATGTCTGGTTGCAAAGTAGCAGATGGAGTTGGCGTTATGCTGGTAACTGGTGTTGGTATTAATACTGAGTGGGGATTGTTGATGGCTAGTATCTCAGAGGACACTGGAGAAGAGACTCCGTTACAGGTACGTTTAAATGGAGTGGCAACTTTTATCGGTATAGTTGGGCTTAGTGTAGCTGTTTTAGTGCTTGCAGTTCTCTTGGGCAGATACTTTTCTGGCCACACAAATGATTTAAATGGAAATCCCGAATTTGTTGCTGGAAGGACCGGTATTAGTGATGCAGTTGATGATGTCATCAAAATTTTTACCATTGCAGTCACAATTGTAGTTGTTGCAGTGCCTGAAGGTCTACCTTTGGCTGTTACTTTAACCTTGGCATATTCAATGCGGAAAATGATGGCAGATAAAGCCTTGGTACGAAGACTGTCAGCCTGCGAAACTATGGGGTCTGCTACAACAATCTGCAGTGATAAGACAGGAACATTAACCTTAAATCAGATGACTGTTGTTGAGGCATATGTTGGGAGGAATAGTCTAAATCCACCAGATGACTCTTCAAAGTTTCATCCAGAAGTATTATCCCTGATAAATGAAAGCATCGCACAAAATTCCACTGGAAATGTTTTTGTGTCTAAGGATGGTGGAGAGGTAGAGGTTTCAGGATCACCAACAGAGAAGGCAATTCTTTCATGGGCAGTCAAGTTGGGTATGAATTTTGATCTTATCAGGTCTAGTTCGACAGTTCTTCACGTCTTTCCGTTCAATTCTGAGAAAAAACGAGGTGGTGTTGCTCTGAAGCTGGCGGACTCTGGAGTGCATATACACTGGAAAGGAGCTGCAGAAATAGTTCTAGGAGCATGTAACCAATATCTTGATTCAAATGGTCACTTGCAATCCATCGGAGAACAGAAGGTTTTTTTCAAGGAGGCTATTGATGACATGGCTGCTCGCAGCTTGCGTTGTGTTGCCATTGCATACAGATCATATGAATTAGACCAAATTCCATCTAATGAGGAGGATTTAAACCAATGGTCCTTACCAGAAAATGAGCTTGTTTTGCTTGCTATTGTTGGAATCAAGGATCCTTGTCGCCCTGGTGTCAAAGATGCTGTGAGAGTATGTACTGACGCCGGTGTTAAGGTACGCATGGTTACTGGAGACAACCTTCAAACAGCAAAGGCAATAGCTCTGGAGTGTGGGATACTGGCTTCAATTGAAGATGCTGTTGAGCCAAATATAATTGAAGGAAAGGTATTTCGGGAACTATCTGAACTAGAAAGGGAACAGATTGCCAAGAAAATCACGGTGATGGGCAGGTCTTCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTACGTAAAGGAGGTGAAGTGGTTGCTGTCACAGGAGATGGTACTAATGATGCCCCTGCACTACATGAGGCAGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAGGTTGCAAAAGAAAGCTCAGATATTATAATCTTGGATGATAACTTTGCATCCGTTGTAAAGGTTGTTCGCTGGGGCCGTTCTGTATATGCAAATATTCAGAAATTTATCCAGTTCCAGCTAACTGTCAATGTTGCTGCTCTTGTGATTAATGTTGTGGCAGCAATAAGTTCTGGTGATGTTCCTTTAAATGCAGTACAGCTTTTGTGGGTCAACCTTATCATGGACACACTTGGGGCCCTTGCACTGGCTACTGAACCACCAACAGATCACCTAATGCACAGATCACCAGTTGGTCGAAGGGAACCTCTTATAACAAATATCATGTGGAGAAACTTGCTCGTACAGGCTACTTATCAAATCACAGTTCTTCTCGTTCTGAACTTCGGCGGTGAAAGTATTCTACCTAAGCAAGATACTAGAGCCCATGGCTTTCAAGTGAAGAATACTCTGATATTCAATGCATTTGTCATGTGCCAGGTATTCAACGAGTTCAATGCTCGGAAGCCAGATGAAATGAATGTCTTCCGAGGAGTGACCAAGAACCGTCTCTTCATGGGAATTGTTGGAATAACCATTATACTTCAGATAATCATCATCGAGTTCCTTGGAAAGTTTGCCTCAACAGTGAGGCTTAATTGGTCGCTGTGGCTTGCTTCTATTTTAATCGGTCTTGTCAGTTGGCCTCTTGCTATAGCTGGAAAACTCATTCCAGTTCCCAAAACACCATTGTCACGTTACTTCTCCAAGCCACTCAGGCGATTGAGGAGGTCTCGTTCAGCGCAATAA | 3291 | 0.4211 | MTTSPNGHLTVNIATGHHDNDDNNNAPPPSDNNNQHDNHDDDDELIDPDDPFDITQTKNASHETLRRWRQAALVLNASRRFRYTLDFKGEEEKQQKKSLIRAHAQVIRAALLFRLAGERELVISPAATPPHQTSVGDYGVGLEELASMSKDQNISALQQLGGVKGISNLLKSNPDKGISGDDDDLLKRKNAFGTNTYPRKKGRSFWRFLWEAWQDLTLIILIIAAAVSLVLGIKTEGLKEGWYDGGSIAFAVLLVIVVTAVSDYRQSLQFQNLNAEKQNIQLEIIRSGRTIKISIFDIVVGDVIPLKIGDQVPADGVLIVGHSLAIDESSMTGESKIVHKDHKAPFFMSGCKVADGVGVMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLSVAVLVLAVLLGRYFSGHTNDLNGNPEFVAGRTGISDAVDDVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYVGRNSLNPPDDSSKFHPEVLSLINESIAQNSTGNVFVSKDGGEVEVSGSPTEKAILSWAVKLGMNFDLIRSSSTVLHVFPFNSEKKRGGVALKLADSGVHIHWKGAAEIVLGACNQYLDSNGHLQSIGEQKVFFKEAIDDMAARSLRCVAIAYRSYELDQIPSNEEDLNQWSLPENELVLLAIVGIKDPCRPGVKDAVRVCTDAGVKVRMVTGDNLQTAKAIALECGILASIEDAVEPNIIEGKVFRELSELEREQIAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRREPLITNIMWRNLLVQATYQITVLLVLNFGGESILPKQDTRAHGFQVKNTLIFNAFVMCQVFNEFNARKPDEMNVFRGVTKNRLFMGIVGITIILQIIIIEFLGKFASTVRLNWSLWLASILIGLVSWPLAIAGKLIPVPKTPLSRYFSKPLRRLRRSRSAQ | 1096 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa2g05735 | 1096 | CDD | P-type_ATPase_Ca_PMCA-like | 185 | 943 | - | - | |
| Vifa2g05735 | 1096 | SFLD | p-type atpase | 485 | 862 | IPR044492 | - | |
| Vifa2g05735 | 1096 | Pfam | haloacid dehalogenase-like hydrolase | 500 | 824 | - | - | |
| Vifa2g05735 | 1096 | SUPERFAMILY | Calcium ATPase, transduction domain A | 281 | 376 | IPR008250 | - | |
| Vifa2g05735 | 1096 | Gene3D | - | 500 | 855 | IPR023214 | - | |
| Vifa2g05735 | 1096 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 161 | 1073 | IPR023298 | - | |
| Vifa2g05735 | 1096 | PRINTS | Sodium/potassium-transporting ATPase signature | 496 | 517 | - | - | |
| Vifa2g05735 | 1096 | PRINTS | Sodium/potassium-transporting ATPase signature | 246 | 266 | - | - | |
| Vifa2g05735 | 1096 | PRINTS | Sodium/potassium-transporting ATPase signature | 622 | 640 | - | - | |
| Vifa2g05735 | 1096 | PANTHER | CATION TRANSPORTING ATPASE | 124 | 1073 | - | - | |
| Vifa2g05735 | 1096 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
| Vifa2g05735 | 1096 | FunFam | Calcium-transporting ATPase | 211 | 268 | - | - | |
| Vifa2g05735 | 1096 | SUPERFAMILY | HAD-like | 501 | 915 | IPR036412 | - | |
| Vifa2g05735 | 1096 | Gene3D | - | 513 | 710 | IPR023299 | GO:0000166 | |
| Vifa2g05735 | 1096 | FunFam | Calcium-transporting ATPase | 259 | 379 | - | - | |
| Vifa2g05735 | 1096 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 510 | 707 | IPR023299 | GO:0000166 | |
| Vifa2g05735 | 1096 | SMART | Cation_ATPase_N_a_2 | 156 | 233 | IPR004014 | - | |
| Vifa2g05735 | 1096 | FunFam | Calcium-transporting ATPase | 513 | 710 | - | - | |
| Vifa2g05735 | 1096 | Pfam | Cation transporter/ATPase, N-terminus | 160 | 228 | IPR004014 | - | |
| Vifa2g05735 | 1096 | Pfam | Cation transporting ATPase, C-terminus | 895 | 1070 | IPR006068 | - | |
| Vifa2g05735 | 1096 | FunFam | Calcium-transporting ATPase | 827 | 1075 | - | - | |
| Vifa2g05735 | 1096 | FunFam | Calcium-transporting ATPase | 703 | 855 | - | - | |
| Vifa2g05735 | 1096 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 151 | 1073 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
| Vifa2g05735 | 1096 | FunFam | Calcium-transporting ATPase 9 plasma membrane-type | 357 | 527 | - | - | |
| Vifa2g05735 | 1096 | FunFam | Calcium-transporting ATPase | 60 | 116 | - | - | |
| Vifa2g05735 | 1096 | Gene3D | - | 60 | 114 | - | - | |
| Vifa2g05735 | 1096 | Gene3D | - | 211 | 1061 | - | - | |
| Vifa2g05735 | 1096 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 505 | 511 | IPR018303 | - | |
| Vifa2g05735 | 1096 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - | |
| Vifa2g05735 | 1096 | Pfam | E1-E2 ATPase | 281 | 481 | - | - | |
| Vifa2g05735 | 1096 | PRINTS | P-type cation-transporting ATPase superfamily signature | 703 | 714 | - | - | |
| Vifa2g05735 | 1096 | PRINTS | P-type cation-transporting ATPase superfamily signature | 725 | 735 | - | - | |
| Vifa2g05735 | 1096 | PRINTS | P-type cation-transporting ATPase superfamily signature | 327 | 341 | - | - | |
| Vifa2g05735 | 1096 | PRINTS | P-type cation-transporting ATPase superfamily signature | 810 | 829 | - | - | |
| Vifa2g05735 | 1096 | PRINTS | P-type cation-transporting ATPase superfamily signature | 503 | 517 | - | - | |
| Vifa2g05735 | 1096 | PRINTS | P-type cation-transporting ATPase superfamily signature | 834 | 846 | - | - | |
| Vifa2g05735 | 1096 | Gene3D | - | 183 | 379 | - | - | |
| Vifa2g05735 | 1096 | NCBIfam | HAD-IC family P-type ATPase | 777 | 890 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Vifa2g05735 | 1096 | NCBIfam | HAD-IC family P-type ATPase | 442 | 526 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Vifa2g05735 | 1096 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 49 | 90 | IPR024750 | GO:0005516 | |
| Vifa2g05735 | 1096 | SFLD | Haloacid Dehalogenase | 485 | 862 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa2g05735 | Vifa-Chr2 | 1695150746 | 1695164435 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa2g05735 | 1 | 1095 | Primary Pumps ATPases | AT3G21180 | 76.299 | 0.0 | 1673 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa2g05735 | K01537 | - | gmx:100777143 | 1794.63 |