Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05734 ATGAGTAAAGAGGTGAAGACAAATGTTCCGGAGTCTTTTCTGAAGAAACAGAAGAGAGCTGAAGAATGGGCTTTGGCTAAAAATCAAGAATTTGAAGCCGCCAAGAAGAAAAGGGCTGAGAACCGTAAGCTGATTTACAGCAGGGCTAAGCAGTATTCTCAGGAATACGAGGAACAGGAAAAGGAATTGATTAGTTTGAAGCGTGAGGCTAAGCTTAAAGGTGGATTTTATGTTGATCCAGAGGCTAAGCTCTTGTTCATTATTCGTATTCGTGGTATTAATGCCATGGACCCAAAAACAAGGAAGATCTTGCAACTATTTCGATTGCGTCAGGTTTTTAATGGGGTTTTCCTCAAAGTTAACAAAGCTACATTGAACATGTTGCACAGGGTTGAGCCATATGTGACTTATGGGTACCCTAATTTGAAGAGTGTTAGGGAACTCATTTACAAGAGAGGTTATGGAAAGCTAGACAGGCAGAGAACTCCTCTCACTGACAACTCAATCATTGAGCAGGGTCTGGGAAAGCATGGAATCATATGCATTGAAGATCTTATCCATGAGATTTTGACTGTTGGACCCCATTTCAAGGAGGCAAACAACTTCCTATGGCCATTCAAGCTCAAGGCTCCTTTGGGTGGCTTGAAGAAGAAGAGGAACCACTATGTTGAAGGAGGTGATGCTGGAAACCGTGAGAATTACATCAATGAGCTCATCAGGAGAATGAATTAG 732 0.4194 MSKEVKTNVPESFLKKQKRAEEWALAKNQEFEAAKKKRAENRKLIYSRAKQYSQEYEEQEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKTRKILQLFRLRQVFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDRQRTPLTDNSIIEQGLGKHGIICIEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05734 243 SUPERFAMILY Ribosomal protein L30p/L7e 84 243 IPR036919 -
Vifa2g05734 243 PANTHER 60S RIBOSOMAL PROTEIN L7 7 243 IPR039699 -
Vifa2g05734 243 NCBIfam 60S ribosomal protein uL30 10 243 IPR005998 GO:0000463|GO:0003735|GO:0022625
Vifa2g05734 243 Gene3D - 84 188 IPR036919 -
Vifa2g05734 243 Gene3D - 189 243 IPR036919 -
Vifa2g05734 243 FunFam 60S ribosomal protein L7 84 188 - -
Vifa2g05734 243 Pfam Ribosomal protein L30p/L7e 85 135 IPR016082 -
Vifa2g05734 243 Pfam Ribosomal L30 N-terminal domain 9 80 IPR012988 -
Vifa2g05734 243 Coils Coil 42 73 - -
Vifa2g05734 243 ProSitePatterns Ribosomal protein L30 signature. 103 135 IPR018038 -
Vifa2g05734 243 CDD Ribosomal_L7_archeal_euk 84 243 IPR035808 -
Vifa2g05734 243 FunFam 60S ribosomal protein L7 189 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05734 Vifa-Chr2 1694921354 1694922880 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05734 4 243 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 85.000 1.45e-155 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05734 K02937 - gmx:100813342 416.001