Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05730 ATGGATGAAGAATCTTATTTCATTGCTTCTATAGTGAATCACATTGCTAATTGTTGTAATTTTGGCTCTTTCTTTACTATGGACGGTAATCACGGGGATCATTCGCGAATTCAGACTAGTGATGGACACCATCCTATACATATGTCATATGAACATCATGGATTGCACCATATGAGCAATGGGAATGGGATGGATGATGATCAAAATAACGATGATTCTAACTGCGGTGGAAGTGAAAATGCGGAAGGTGAAGACAGGTTTATGTCTTTGACTCGGTGTCACCAGAAAAGGTTCAATCTGTACTTCTGTTACTCGGAGGCCGTGAACTACCTCCAACCCGTACCTTCCATGCCAATTTCTCCTGACGAAAATAACCGGGGATTTACTGGCACTCCACAAAAATTCAGCGAAGTAGCACTAAGGATGCAAAGAAATAAAGGCCAGTTTACATCTTCCAAGTCCAATCATGATGAGTCTGAAATAAATTGCGGAACAAATGAAGGGTTGATGGTAGACAATAATGGATCCCAACAGCAAGATACTGTTTGTAGGCACTGTGGCATCAGTGAGAAGAGCACGCCAATGATGCGACGTGGACCTGAAGGGCCAAGAACCCTCTGCAATGCTTGTGGACTTATGTGGGCAAATAAGGGAGCTCTTAGGGACCTATCAAGGGCCACAACCTTGCCAGCACACAATTCTCCATTAAACAAGAATGAGAGTCAAAATTTGGAGAGCAATCAGATAGTGCTTAGAGATGCTGCTGAATCATCATGA 777 0.4286 MDEESYFIASIVNHIANCCNFGSFFTMDGNHGDHSRIQTSDGHHPIHMSYEHHGLHHMSNGNGMDDDQNNDDSNCGGSENAEGEDRFMSLTRCHQKRFNLYFCYSEAVNYLQPVPSMPISPDENNRGFTGTPQKFSEVALRMQRNKGQFTSSKSNHDESEINCGTNEGLMVDNNGSQQQDTVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGALRDLSRATTLPAHNSPLNKNESQNLESNQIVLRDAAESS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05730 258 CDD ZnF_GATA 182 224 IPR000679 GO:0006355|GO:0043565
Vifa2g05730 258 ProSitePatterns GATA-type zinc finger domain. 183 210 IPR000679 GO:0006355|GO:0043565
Vifa2g05730 258 Pfam GATA zinc finger 183 218 IPR000679 GO:0006355|GO:0043565
Vifa2g05730 258 MobiDBLite consensus disorder prediction 62 77 - -
Vifa2g05730 258 Gene3D - 172 235 IPR013088 GO:0006355|GO:0008270
Vifa2g05730 258 SMART GATA_3 177 230 IPR000679 GO:0006355|GO:0043565
Vifa2g05730 258 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 178 240 - -
Vifa2g05730 258 ProSiteProfiles GATA-type zinc finger domain profile. 177 233 IPR000679 GO:0006355|GO:0043565
Vifa2g05730 258 PANTHER GATA TRANSCRIPTION FACTOR 28 137 242 IPR045280 GO:0006355
Vifa2g05730 258 MobiDBLite consensus disorder prediction 53 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05730 Vifa-Chr2 1694072634 1694078356 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05730 27 255 Tify Gene Family AT1G51600 41.892 4.22e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vifa2g05730 GATA 8.6e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05730 - - gmx:100812262 250.751