Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05710 ATGGCAAAGAGATCTCAAAAAACCACTTCTTCTTCTTCTTCTTCTACTATTACTACTACTTCATCTTCTTCTTCTTCTACCACCATGCTGAAACGTAAACGTAAAAGCATCCCAAGAAACTCACCTCCACAAAGAAGCTCTATTTATAGAGGTGTCACAAGACATCGTTGGACTGGTCGATATGAAGCTCATTTGTGGGATAAGAATTGTTGGAACCAATCACAAAGCAAGAAAGGAAGACAAGGGGCTTATGATGATGAAGAGGCTGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTATTGGGGCCAAGCCACAATTCTTAACTTTCAAGTATCAAATTATCAAGAGGAGTTCAAAGAGATGGAAGGACAATCAAAAGAAGAATATATTGGATCCTTAAGAAGAAAAAGCAGTGGATTTTCAAGAGGAGTTTCAAAATACAGAGGTGTAGCAAGACACCACCACAATGGAAGATGGGAAGCTCGAATTGGAAGAGTCTTTGGCAACAAATACTTATACCTTGGAACTTATGCTACACAAGAAGAAGCAGCCATAGCATATGACAAAGCAGCAATACAATATCGAGGACTTAACGCGGTTACAAATTTTGATCTGAGCCGTTATATCAATAATGATAACAATAACAATAATAATCAAGAACTAGTTGATGCAGGTGACACATCAACAACATCTTCCGCGGTCGATCTTATGTTAAACTCATCAGAATTCAAACAAATGTTAGAACATACAACATCCTCGTCATCAATCGAAGATAGTTACACTCCACCACTTGTTGAATCAAATCCGCCACATCGGAATTTTCCTGAGGATATTCAAACAATCTTTGAAACGCAATATTCAAGTATCTACAATGAGAATGATGATGACTTGATATTTGGTGAGTTGACCTCAATTAATGCATCAATTTTTCATTATGAGCTTGTGCTTGATTAG 957 0.3783 MAKRSQKTTSSSSSSTITTTSSSSSSTTMLKRKRKSIPRNSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNQSQSKKGRQGAYDDEEAAARAYDLAALKYWGQATILNFQVSNYQEEFKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAIAYDKAAIQYRGLNAVTNFDLSRYINNDNNNNNNQELVDAGDTSTTSSAVDLMLNSSEFKQMLEHTTSSSSIEDSYTPPLVESNPPHRNFPEDIQTIFETQYSSIYNENDDDLIFGELTSINASIFHYELVLD 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05710 318 PRINTS Ethylene responsive element binding protein signature 187 207 IPR001471 GO:0003700|GO:0006355
Vifa2g05710 318 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Vifa2g05710 318 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 11 230 - -
Vifa2g05710 318 Gene3D AP2/ERF domain 48 113 IPR036955 GO:0003700|GO:0006355
Vifa2g05710 318 Gene3D AP2/ERF domain 146 207 IPR036955 GO:0003700|GO:0006355
Vifa2g05710 318 FunFam AP2-like ethylene-responsive transcription factor 47 113 - -
Vifa2g05710 318 Pfam AP2 domain 48 103 IPR001471 GO:0003700|GO:0006355
Vifa2g05710 318 Pfam AP2 domain 146 197 IPR001471 GO:0003700|GO:0006355
Vifa2g05710 318 CDD AP2 146 207 IPR001471 GO:0003700|GO:0006355
Vifa2g05710 318 MobiDBLite consensus disorder prediction 1 51 - -
Vifa2g05710 318 ProSiteProfiles AP2/ERF domain profile. 48 111 IPR001471 GO:0003700|GO:0006355
Vifa2g05710 318 MobiDBLite consensus disorder prediction 1 31 - -
Vifa2g05710 318 SMART rav1_2 48 117 IPR001471 GO:0003700|GO:0006355
Vifa2g05710 318 SMART rav1_2 147 211 IPR001471 GO:0003700|GO:0006355
Vifa2g05710 318 SUPERFAMILY DNA-binding domain 47 113 IPR016177 GO:0003677
Vifa2g05710 318 SUPERFAMILY DNA-binding domain 146 207 IPR016177 GO:0003677
Vifa2g05710 318 ProSiteProfiles AP2/ERF domain profile. 147 205 IPR001471 GO:0003700|GO:0006355
Vifa2g05710 318 MobiDBLite consensus disorder prediction 252 274 - -
Vifa2g05710 318 FunFam AP2-like ethylene-responsive transcription factor 146 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05710 Vifa-Chr2 1691209102 1691213763 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05710 44 209 AP2-EREBP Transcription Factor Family AT5G57390 71.006 3.87e-86 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Vifa2g05710 AP2 1.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05710 K09285 - gmx:100807781 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05710 2 1691209102 1691213763 Vifa2g05710 2 1691209102 1691213763 ECH