Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05707 ATGGAGAAGTACGAAAAAATCGAGAAAGTCGGAGAAGGAACATACGGCAAAGTGTACAAAGCGAAAGAAACCTCCACCGGGCAAATCGTGGCCCTAAAAAAAAACCGTTTCGAAACGGACGAAGAAGGCGTCCATCCCACCGCCCTCCGCGAAGTCTCCCTCCTCCAAATGCTCTCTCAATCTCTCTACATCGTCCGCCTCCTCAACGTCGAACACGTCGACAAAATCCCCAATTCCGGCACCAATTCCACTCCTAAGTCCATCCTCTACCTCGTCTTCGAGTATCTCGACACCGATCTGAAGAAATTCATCGATACTTTTCGTAAAGGAGCCAACCCTAGGCCGTTGCCGACTTCGCTTGTTCAGAGTTTTCTGTTTCAGCTTTGTAAGGGGGTGACTCATTGTCATAGTCATGGTGTGCTGCACCGGGATTTGAAGCCGCAGAATCTTCTTCTCGATCAGCAGAAAGGGATTTTGAAGATTGCTGACTTTGGTCTTGGGAGGACTTTTGCTGTTCCGCTTATGAGTTATACGCATGAGATTGTTACTCTTTGGTATAGAGCTCCTGAGGTTTTGCTTGGATCTACTACTTACTCTACTGGAGTTGATATCTGGTCTGTTGGATGTATCTTTGCTGAAATGGTGAGGAGGCAGGCTTTGTTTCCGGGGGATTCTGAATATCAGCAGCTTCTTAGCATATTCAAGCTTTTGGGGACTCCAACGGAGCAGCAATGGCCAGGAGTTAGCTCTCTGCGTGATTGGCATGTCTACCCAAAGTGGGAGCCTCAAAATTTGACAACAGCTGTGCCCTCTTTGGCACCTGAAGGAGTGGACCTTCTCTCGAAAATGATCAAGTATAATCCCTGTGAGAGAATATCTGCCAAAGCAGCACTTGATCATCCCTACTTTGACAGCCTTGACAAGTCTCTGTATTAA 936 0.4733 MEKYEKIEKVGEGTYGKVYKAKETSTGQIVALKKNRFETDEEGVHPTALREVSLLQMLSQSLYIVRLLNVEHVDKIPNSGTNSTPKSILYLVFEYLDTDLKKFIDTFRKGANPRPLPTSLVQSFLFQLCKGVTHCHSHGVLHRDLKPQNLLLDQQKGILKIADFGLGRTFAVPLMSYTHEIVTLWYRAPEVLLGSTTYSTGVDIWSVGCIFAEMVRRQALFPGDSEYQQLLSIFKLLGTPTEQQWPGVSSLRDWHVYPKWEPQNLTTAVPSLAPEGVDLLSKMIKYNPCERISAKAALDHPYFDSLDKSLY 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05707 311 SMART serkin_6 4 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g05707 311 Gene3D Transferase(Phosphotransferase) domain 1 99 310 - -
Vifa2g05707 311 Gene3D Phosphorylase Kinase; domain 1 1 97 - -
Vifa2g05707 311 ProSiteProfiles Protein kinase domain profile. 4 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g05707 311 Pfam Protein kinase domain 4 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g05707 311 PANTHER CELL DIVISION PROTEIN KINASE 1 303 - -
Vifa2g05707 311 SUPERFAMILY Protein kinase-like (PK-like) 1 306 IPR011009 -
Vifa2g05707 311 FunFam Cyclin-dependent kinase 4 1 97 - -
Vifa2g05707 311 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Vifa2g05707 311 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vifa2g05707 311 FunFam Cyclin-dependent kinase 2 99 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05707 Vifa-Chr2 1690535027 1690538166 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05707 1 311 Core Cell Cycle Gene Families AT3G54180 79.743 0.0 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Vifa2g05707 Pkinase 1.3e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05707 K07760 - gmx:100805119 532.717