Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05700 ATGATCATAAATGTGAGAGATTCGACCATGGTACGACCGTCTGAGGAGGTTACACGACGGACGGTGTGGAACTCCAACGTTGATTTGGTGGTACCGAATTTCCATACGCCTAGTGTTTATTTCTATCGAAATAATAGTGCGTCGAATTTCTTTGACGCCAAAATTATGAAGGAAGCTCTCAGCAAAGTGCTTGTTCCTTTTTATCCAATGGCTGGTCGTCTTCGTCGTGATGAAGACGGCCGTGTTGAGATTGATTGTGATGGGCAGGGAGTGCTCTTTGTGGAGGCTGATACAAGCGGAGTTATCGATGATTTTGGTGACTTTGCTCCTACACTTGAGCTCCGTCAGCTTATTCCAGCCGTTGATTATTCGCGTGGAATCCAAACGTATCCCCTTCTAGTGTTACAGGTAACATATTTCAAATGTGGAGGAGTATCACTCGGTGTTGGTACTTTTGATGAACTCTATGCAAATGTTAATGAGACTTGTTTCACCTTACAATAG 504 0.4385 MIINVRDSTMVRPSEEVTRRTVWNSNVDLVVPNFHTPSVYFYRNNSASNFFDAKIMKEALSKVLVPFYPMAGRLRRDEDGRVEIDCDGQGVLFVEADTSGVIDDFGDFAPTLELRQLIPAVDYSRGIQTYPLLVLQVTYFKCGGVSLGVGTFDELYANVNETCFTLQ 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05700 167 Pfam Transferase family 3 150 - -
Vifa2g05700 167 Gene3D - 1 152 IPR023213 -
Vifa2g05700 167 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 8 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05700 Vifa-Chr2 1689305809 1689308480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05700 1 150 Monolignol Biosynthesis Gene Families AT5G48930 76.000 5.17e-82 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05700 K13065 - gmx:100820075 278.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00062 5 7707941 7711010 Vifa2g05700 2 1689305809 1689308480 PCT