Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05698 ATGGGGATATATCTAAGTGCTCCAAAAACTGAGAAGGCCTCTGAAGATGGTGAGAATGGCATGCTTCGCTTCGGTTTGTCTTCAATGCAGGGCTGGCGTGCTTCTATGGAAGATGCACATGCAGCTCATCCATATTTGGACGAGTCTACGTCTTACTTTGGTGTTTATGATGGCCATGGAGGTAAAGCTGTTTCAAAATTCTGTGCCAAGTTTCTACACCAGCAGGTGCTTAGGCATGAAGCTTACTTAGCTGGAGATATAGCCACATCTTTACAGAAATCATTCCTCAGAATGGATGAGATGATGCGCGGCCAAAGAGGGTGGAGAGAATTAGCAGTCTTGGGAGATAAAATGGAAAAGTTCTCTGGTATGTTAGAGGGGTTTATATGGTCTCCCAAGAGTAGTGAAGCCAATGACCGTGCCGATGAGTGGGCTTTTGAGGAGGGACCCCATTCCGATTTCGGTGGGCCAAACTCTGGAAGCACAGCTTGTGTGGCTGTCATCCGAGGAAACAAACTTGTTGTTGCAAATGCTGGTGATTCTAGATGTGTGTTATCAAGGAAAGGCCAGGCACACAACTTGTCTAAGGATCACAAGCCTGACCTTGAACTTGAGAAAGACAGGATTTTGAAAGCTGGCGGTTTCATCCAAGTTGGACGAGTCAATGGAAGTTTGAACTTGGCTAGGGCAATCGGTGATATGGAGTTTAAGCAGAACAAGTATTTGCCTGCTGAAAAGCAGGCTGTGACTGCTGATCCGGACGTAACTTCAGTTGAGCTTTGCGGGGATGATGAGTTTCTTGTGATAGCATGTGATGGGATATGGGATTGCATGTCCAGCCAACAACTTGTGGACTATATACATGGCCAGTTAAAGGCAGAGGATAAACTTTCTGCGGTTTGTGAGAAAGTATTTGATAGGTGCTTGGCACCAACAGCTGGTGGTGAGGGATGTGATAACATGACCATGATCTTGATTCAGTTCAAAAATCCTCCCACTTCAGATGCTTCTGTCCCAGACCAACCTCAACCATCTGCACAACCGGCTCCAAGTCCTCCAGCTTCAGATGCATCTGCTCAATCGACTCCAAATCCTCCAGCTTCAGATGCATCTGCTCAATCGACCCCAAATCCTCCAGCTTCAGATGCATCTGCTCAACCGTCTGAAGCCGACAGAAGTTAG 1182 0.4679 MGIYLSAPKTEKASEDGENGMLRFGLSSMQGWRASMEDAHAAHPYLDESTSYFGVYDGHGGKAVSKFCAKFLHQQVLRHEAYLAGDIATSLQKSFLRMDEMMRGQRGWRELAVLGDKMEKFSGMLEGFIWSPKSSEANDRADEWAFEEGPHSDFGGPNSGSTACVAVIRGNKLVVANAGDSRCVLSRKGQAHNLSKDHKPDLELEKDRILKAGGFIQVGRVNGSLNLARAIGDMEFKQNKYLPAEKQAVTADPDVTSVELCGDDEFLVIACDGIWDCMSSQQLVDYIHGQLKAEDKLSAVCEKVFDRCLAPTAGGEGCDNMTMILIQFKNPPTSDASVPDQPQPSAQPAPSPPASDASAQSTPNPPASDASAQSTPNPPASDASAQPSEADRS 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05698 393 Pfam Protein phosphatase 2C 140 313 IPR001932 -
Vifa2g05698 393 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Vifa2g05698 393 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Vifa2g05698 393 CDD PP2Cc 23 328 IPR001932 -
Vifa2g05698 393 SMART PP2C_4 13 326 IPR001932 -
Vifa2g05698 393 Gene3D - 1 329 IPR036457 -
Vifa2g05698 393 ProSiteProfiles PPM-type phosphatase domain profile. 23 328 IPR001932 -
Vifa2g05698 393 PANTHER PROTEIN PHOSPHATASE 2C 18 327 IPR015655 GO:0004722|GO:0006470
Vifa2g05698 393 MobiDBLite consensus disorder prediction 352 387 - -
Vifa2g05698 393 MobiDBLite consensus disorder prediction 330 393 - -
Vifa2g05698 393 SUPERFAMILY PP2C-like 3 331 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05698 Vifa-Chr2 1688230467 1688239964 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05698 1 340 PP2C-type Phosphatase Gene Family AT2G25070 74.194 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05698 K17499 - gmx:100776787 634.409