Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05690 ATGGTTACCGATAATCAAATTTTGGAATATCATGATCCATGTTCATCTTCGGAGAGGTTTCTAAAGCCGAAAAAACCTGCGGGGAGGAAAAAGTTCAGAGAAACGCGCCACCCGATATACCGTGGTGTAAGAAAGAGGGATTCTGGCAAGTGGGTGTGTGAAGTGAGAGAGCCTAACAAGAAAACCAGAATCTGGCTAGGGACATTTCTTACTCCTGAGATGGCGGCGCGTGCGCATGACGTTGCTGCGATTGCGCTTAGAGGAGAGTCTGCTTGTCTTAATTTTGCTGACTCTGCTTGGAGCTTGCCGGTCCCGGCTACGTCGAATGCGAGAGATATCCAAAAGGCGGCGGCAGAGGCAGCGGAGGCTTTCCGGCCGGAGAGTAAGGTTCAGAACAGTGAGGATAGTGAGGAGAGGAAGGAGAATGAGTCGTCGACGGTGACGGTGGCAGGGGTGGAGACGGTGATGGAGCAACGAGAGGAAGAAGAGGATAGAGTGCCGGAGTATTTGAGAAACATGGTTCTTATGTCACCTGCACGTTACTGGGGGAACCAGTTTTGTTTTGATGACGTGGAATTTGGTGATACTGAAGTTTCATTATGGACTTATTGA 612 0.4967 MVTDNQILEYHDPCSSSERFLKPKKPAGRKKFRETRHPIYRGVRKRDSGKWVCEVREPNKKTRIWLGTFLTPEMAARAHDVAAIALRGESACLNFADSAWSLPVPATSNARDIQKAAAEAAEAFRPESKVQNSEDSEERKENESSTVTVAGVETVMEQREEEEDRVPEYLRNMVLMSPARYWGNQFCFDDVEFGDTEVSLWTY 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05690 203 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Vifa2g05690 203 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Vifa2g05690 203 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Vifa2g05690 203 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Vifa2g05690 203 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Vifa2g05690 203 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 17 203 IPR045277 GO:0003700
Vifa2g05690 203 MobiDBLite consensus disorder prediction 128 144 - -
Vifa2g05690 203 SUPERFAMILY DNA-binding domain 39 98 IPR016177 GO:0003677
Vifa2g05690 203 FunFam Ethylene-responsive transcription factor 2 38 97 - -
Vifa2g05690 203 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Vifa2g05690 203 PIRSF PTI6 116 198 IPR017392 GO:0003700
Vifa2g05690 203 PIRSF PTI6 6 157 IPR017392 GO:0003700
Vifa2g05690 203 MobiDBLite consensus disorder prediction 121 147 - -
Vifa2g05690 203 Pfam AP2 domain 38 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05690 Vifa-Chr2 1686040905 1686041516 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05690 9 203 AP2-EREBP Transcription Factor Family AT4G25470 54.327 1.85e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa2g05690 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05690 - K09286 lja:Lj5g3v2028390.1 244.973