Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05687 ATGACGAGTCCGTTAAGGGAAGACGAGAAACACGAGCGCGCGATTCGAGCTCTTCTTAGGCTCGAACCCAATCGAACATGCATTAACTGCAACAGTTTGATTGATATTTTACTCTGCACTGATTGCTTCCATGATGGGAAATTTGTCGCCGGTCATTCAAGTATAGATTTTATAAGGGTGGATTCAACAAGAGATTACGGTGAACTAGATGGGGAAAGTTGGACTGATCAAGAAACTTTGTTGCTGCTTGAAGCAATGGAGATTTACAATGAGAATTGGAATGAAATTGCCGAGCATGTTGGTACCAAGTCAAAAGCACAATGTATTCTTCATTTTCTTCGTATGCCCATGGAAGATGGGAAATTGGAAAATATCAATGTTCCAAGCATGTCTTTGTCATCCAGTGCGATGAATAGAGATGATAATGGAAGATCGCATCATTACTCGAATGGAGATTCTGCAGGACCTGCCCATCAAATCAGAGATTCTGACAACCGCCTGCCTTTTGCTAATTCTGGAAATCCTGTTATGGCTCTGGTTGCCTTTTTAGCCTCTGCGGTTGGACCAAGAGTAGCGGCCTCATGTGCTCATGCAGCATTATCAGTGTTGTCAGGGGATAATACTGGCTCCCAGACGGAGGCATCAGGGCATGATAATAGGACAAATCCAGAAAACATGCATTGTAGGGATGGTGGCTCTCGAGGAGAAGCTGCAATTTCAAATAATCATAATGAGGAAAAGGCAAAAGCAATTAGTTCGCGGGATCAAAATGAGGGTAGGACCACCCCACTCTCTGCTGAAAAAGTTAATGAAGCAGCTAAAGCAGGCCTCTCTGCTGCAGCAATGAAAGCTAAATTGTTTGCCGATCACGAAGAACGAGAAATTCAGAGATTATGTGCTAATATAATTAATCATCAGTTGAAAAGATTGGAATTGAAGCTGAAACAGTTTGCAGAAATCGAAACATTGTTGATGAAGGAATGCGAACAAGTGGAAAGGGCAAAACAGAGGTTTGCTGCTGAACGCACCCGTGTTATATCAGCACGTTTTGGAACTGCAGGAACTACGCCTGCAATGAATGCATCTGGTGTTGGTCCTAACAATTAA 1107 0.4291 MTSPLREDEKHERAIRALLRLEPNRTCINCNSLIDILLCTDCFHDGKFVAGHSSIDFIRVDSTRDYGELDGESWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRMPMEDGKLENINVPSMSLSSSAMNRDDNGRSHHYSNGDSAGPAHQIRDSDNRLPFANSGNPVMALVAFLASAVGPRVAASCAHAALSVLSGDNTGSQTEASGHDNRTNPENMHCRDGGSRGEAAISNNHNEEKAKAISSRDQNEGRTTPLSAEKVNEAAKAGLSAAAMKAKLFADHEEREIQRLCANIINHQLKRLELKLKQFAEIETLLMKECEQVERAKQRFAAERTRVISARFGTAGTTPAMNASGVGPNN 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05687 368 MobiDBLite consensus disorder prediction 205 268 - -
Vifa2g05687 368 FunFam SWI/SNF complex subunit SMARCC2 isoform C 70 120 - -
Vifa2g05687 368 MobiDBLite consensus disorder prediction 205 219 - -
Vifa2g05687 368 Gene3D - 70 120 - -
Vifa2g05687 368 MobiDBLite consensus disorder prediction 240 254 - -
Vifa2g05687 368 CDD SANT 73 115 IPR001005 -
Vifa2g05687 368 SMART sant 70 118 IPR001005 -
Vifa2g05687 368 ProSiteProfiles SANT domain profile. 69 120 IPR017884 -
Vifa2g05687 368 SUPERFAMILY Homeodomain-like 71 124 IPR009057 -
Vifa2g05687 368 Pfam SWIRM-associated region 1 275 351 IPR032451 -
Vifa2g05687 368 ProSiteProfiles Myb-like domain profile. 73 116 IPR001005 -
Vifa2g05687 368 PANTHER SWI/SNF COMPLEX-RELATED 71 345 - -
Vifa2g05687 368 MobiDBLite consensus disorder prediction 132 166 - -
Vifa2g05687 368 Pfam Myb-like DNA-binding domain 73 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05687 Vifa-Chr2 1685393149 1685395935 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05687 28 112 EF-hand Containing Proteins AT3G07740 33.333 9.30e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa2g05687 SWIRM-assoc_1 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05687 K11649 - gmx:100780440 568.926