Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05682 ATGTCGGGACCAGCGTCCAGATCCAGAATGGCGGTAGCAGAAGAAGAAGAAGAAGTAGAAAAGAAAGATTTATTCTTCATCGCTGATTGTTTTCCTTTACTAGAAGAACTCAATCTCACTTATCCCCGTACTTGTTGTGACAAAGATTTTATGGTAGATGATAATGATCCATTATTGGCACTTCCCAATCTCCGCAGGATCAACCTATCTGGTGTTTGCATTGTAAATTTTGGAAGGACACGGGAGAAGCTTCAATTTGCGGAAAGGGTTATGGTTGCAATCGAAAACACTTGGGACATGATTGTTCAATATGCTAAACCTTGTGAACAGATATATGTGCTCAAATTTGCCCAATATACTGGTGCTCGTACTTTTGTTGGTAGACACACTTCTGGTACATTCACAAATCAACTTCAAACTTCATTTTGTGACCCTCGTCTTCTTATACTCACTGATCCAAGAATTGATCACCAGCCAATTAAGAAACTTGCTCTTGGTATATATTGGTCTGTTTTGAAGCTCACTTCAATCTTGCCACCAAGTCTACCATTAATAAAGGAGTTGAAAAAGAGGAATGCATTGCATACCTATTGA 594 0.3906 MSGPASRSRMAVAEEEEEVEKKDLFFIADCFPLLEELNLTYPRTCCDKDFMVDDNDPLLALPNLRRINLSGVCIVNFGRTREKLQFAERVMVAIENTWDMIVQYAKPCEQIYVLKFAQYTGARTFVGRHTSGTFTNQLQTSFCDPRLLILTDPRIDHQPIKKLALGIYWSVLKLTSILPPSLPLIKELKKRNALHTY 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05682 197 Gene3D - 64 167 - -
Vifa2g05682 197 PANTHER 40S RIBOSOMAL PROTEIN SA 70 166 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vifa2g05682 197 SUPERFAMILY Ribosomal protein S2 69 162 IPR023591 -
Vifa2g05682 197 PRINTS Ribosomal protein S2 signature 145 162 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g05682 197 PRINTS Ribosomal protein S2 signature 71 80 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g05682 197 PRINTS Ribosomal protein S2 signature 120 137 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05682 Vifa-Chr2 1683580237 1683582315 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05682 71 166 Cytoplasmic Ribosomal Protein Gene Family AT1G72370 69.792 9.97e-41 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05682 K02998 - pda:103712591 137.887