Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05679 ATGAAAGTGAAGATCCTGCAGTATGTTATTTTCTTTATCTCCAACAATAACTACCTTCATACAATGATGCTCTTATGGCATGCTATTGCTTCTTGGACTTGGGATGCACAGGATGAAACGTGTGGGATTTGTAGGATGGCCTTTGATGGATGCTGTCCTGATTGTAAACTTCCTGGGGATGACTGCCCGTTGATTTGGGGTGTGTGCAATCATGCATTTCATTTGCATTGTATCTTGAAATGGGTGAATTCTCAAACCTCACAAGCACATTGCCCTATGTGCCGTCGGGAATGGCAATTTAAAGATTACAGAAGACAAGGTGCTACTTGTTGGAGAAAAAGAAATCTCAGAACATTACAAATGTTATAA 369 0.4038 MKVKILQYVIFFISNNNYLHTMMLLWHAIASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGVCNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKDYRRQGATCWRKRNLRTLQML 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05679 122 PANTHER RING BOX 25 103 - -
Vifa2g05679 122 CDD RING-H2_APC11 38 100 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Vifa2g05679 122 ProSiteProfiles Zinc finger RING-type profile. 52 95 IPR001841 -
Vifa2g05679 122 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 23 102 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Vifa2g05679 122 FunFam Anaphase-promoting complex subunit 11 19 102 - -
Vifa2g05679 122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 105 IPR013083 -
Vifa2g05679 122 SUPERFAMILY RING/U-box 25 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05679 Vifa-Chr2 1682655283 1682657696 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05679 52 95 C3H Transcription Factor Family AT1G72220 41.304 1.61e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05679 K03358 - cit:102627047 195.667