Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05678 ATGTTTGACTCTGGTTACAAGTCACAATATATTGGAGGTCAGAAAGAGAAATTTGTGAGGTTGGATGAATTGGATTCCAATTCGTCGAAGCAATCAAGCTCAAGTGGGATGAAGAAATTAAGATTTAATATAAATTCTTTGCCAATTCCGGGTCGCGGGAAAAAGAACTCGTCGAAATCATTTCGGTTTGGAGTGAAGAGGGGATCAGATGGACTAAAACATATTGGAAGATCAATCAAAAGTGGAGTCACTTGGTCGGTTTTTCCGGAAGATCTTAAAGTGTCGCAGAAAAAAGTATTTGATCCACAAGATAAGAATCTTCTGTACTGGAACAAGTTTTTCGAGATTCTATGCATTCTTTCAGTAGCTTGTGATCCTTTCTTTTTTTACCTTCCTTATTTCAACCACAAATCATTTTGCTTAGCAATCGATAACAAGCTGGCGAGTTTTATTATTACATTGAGAACAATATGTGATTGCATTTATCTCATTCGCATAAGTTTCCAATTTCGCACCGCCTTCATTGCGCCTTCGTCTCGAGTATTTGGAAGAGGTGAACTTGTCATAGATCCTGGATTGATCGCAAAACGCTATTTACAACGCTACTTCATTTTTGACTTCTTGTCTGTAATGCCATTCCCACAGTTTGTAATATGGAAATATCTTAATACTTCAAGACGTATGGAAGTATTGGATACAAAAACATCGCTTTTGAGAAATGTCATCATGCAATACTTACCAAGATTTGTACGATTTATACCGTTGGCGTCGGAAGTTAAAAAGACAGCTGGTGTTTTCTCTGAAAATGCATTGCTTGGTGCTATGTACTATTTGATTTGGTATATGCTTGCTAGCCATATTACGGGTTCTGTCTGGTACTTACTAGCCATAGAACGCAACGACACGTGTTGGAAGAATGCCTGTAAGGAAGTTTCGGGATGTAACTCACATTTTTTGTATTGTGGAAGTTCGAGTAAGCATTTACGAGGGTACGAGAAATGGAGAAATGTCAGTGAATCTGTTCTTAAAAGTAAATGCTTTGTTGAAGATGGTAACTCAGCTTTTAATTATGGAATCTTCTCTCAAGCTATAGAGTCTGATATTGTTGCTTCCATACAAGTTTTCCCAAAATTTTGTTACTGTCTATGGTGGGGCCTTCAGAATTTGAGTACACTTGGTCAGGGGCTTCTAACTAGTACCTACCCTGGTGAGGTTTTGTTTTCCATAGTAATAGCTATTATGGGGCTTGTTCTTTTTGCTCTTCTCATAGGAAACATGCAGACTTACCTTAACTCTATGTCGGTTCGCCTGGAGGAAATGAGGATCAAAAGGCGTGATTCCGAGCAGTGGATGCATCATCGCTTGCTTCCTTCAGAGCTAAGGGAAAGAGTCCGACGATACGACCAATACAAGTGGTTGAACACGCGTGGAGTAGATGAAGAAAACTTGGTTCAGAGTCTTCCTAAAGATCTCAGAAGAGATATCAAACGTCATCTTTGTTTGAATTTGGTCAGAAGGGTTCCTCTCTTTGCTAACATGGATGAACGCTTGCTTGATGCGATATGCGAGCGATTGAAACCGAGTTTATACACGGAGGGAACCTACATAGTTAGGGAAGGTGATCCAGTTGACGAGATGTTGTTCATCATTCGTGGTCGTCTAGAGAGTGTTACTACAGATGGTGGAAGAAGCGGCTTTTTCAACAGAGGAGTTTTGAAGGAAGGTGATTTCTGTGGTGAAGAGTTGTTAACATGGGCATTGGATCCAAAATCTGCTGCTAACTTGCCATCATCAACTAGAACAGTGAAAGCTATGAGTGAAGTAGAGGCATTTGCTTTAGAAGCAGAGGAGTTAAAGTTTGTCGCATCACAATTTAGACACATACATAGTAGACAGGTTCAACATACCTTCCGTTTCTACTCACAACAATGGAGAACATGGGCTGCAATCTACATTCAAGCTGCATGGAGGAAGCATTTAAAGAGAAGGCGAAAGAAAGAGGAAGAAGAATACTATGAAGGAATTGATGAATCTGCAAGGGCTTTGGTTCCACAAGCTCAAAATTCATCAAGATTTGGAATTAATACAACAGTCTATGCTTCTCGCTTTGCTGCTAATCTTCGTGGTTTTAGACAACGAATTCCAAGTACCGGAGACCTGTTGAGTATCCCAAAACCCCCAGAACCTGACTTCAGTGCTCTCGATAATGAAGAGTGA 2217 0.4005 MFDSGYKSQYIGGQKEKFVRLDELDSNSSKQSSSSGMKKLRFNINSLPIPGRGKKNSSKSFRFGVKRGSDGLKHIGRSIKSGVTWSVFPEDLKVSQKKVFDPQDKNLLYWNKFFEILCILSVACDPFFFYLPYFNHKSFCLAIDNKLASFIITLRTICDCIYLIRISFQFRTAFIAPSSRVFGRGELVIDPGLIAKRYLQRYFIFDFLSVMPFPQFVIWKYLNTSRRMEVLDTKTSLLRNVIMQYLPRFVRFIPLASEVKKTAGVFSENALLGAMYYLIWYMLASHITGSVWYLLAIERNDTCWKNACKEVSGCNSHFLYCGSSSKHLRGYEKWRNVSESVLKSKCFVEDGNSAFNYGIFSQAIESDIVASIQVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVLFSIVIAIMGLVLFALLIGNMQTYLNSMSVRLEEMRIKRRDSEQWMHHRLLPSELRERVRRYDQYKWLNTRGVDEENLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEGTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGVLKEGDFCGEELLTWALDPKSAANLPSSTRTVKAMSEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRKHLKRRRKKEEEEYYEGIDESARALVPQAQNSSRFGINTTVYASRFAANLRGFRQRIPSTGDLLSIPKPPEPDFSALDNEE 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05678 738 Pfam Ion transport protein 109 436 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vifa2g05678 738 SUPERFAMILY cAMP-binding domain-like 439 629 IPR018490 -
Vifa2g05678 738 SMART cnmp_10 509 640 IPR000595 -
Vifa2g05678 738 Gene3D Jelly Rolls 507 627 IPR014710 -
Vifa2g05678 738 FunFam Cyclic nucleotide-gated ion channel 1 436 500 - -
Vifa2g05678 738 Gene3D Helix hairpin bin 436 500 - -
Vifa2g05678 738 MobiDBLite consensus disorder prediction 716 738 - -
Vifa2g05678 738 Pfam Cyclic nucleotide-binding domain 530 619 IPR000595 -
Vifa2g05678 738 SUPERFAMILY Voltage-gated potassium channels 102 431 - -
Vifa2g05678 738 FunFam Cyclic nucleotide-gated ion channel 1 507 625 - -
Vifa2g05678 738 Gene3D - 112 434 - -
Vifa2g05678 738 ProSiteProfiles IQ motif profile. 645 674 IPR000048 GO:0005515
Vifa2g05678 738 CDD CAP_ED 509 640 IPR000595 -
Vifa2g05678 738 ProSiteProfiles cAMP/cGMP binding motif profile. 509 639 IPR000595 -
Vifa2g05678 738 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 91 731 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05678 Vifa-Chr2 1682249629 1682252709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05678 6 733 Ion Channels AT1G15990 66.355 0.0 977
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05678 K05391 - gmx:100810453 1200.27