Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05668 ATGGATTGTTCATCATACATCAACACTTCCTTGGATCTCAACATTACTCCTTATACAGTTCAACAAATACTTCCAAAAAAAGAGGTGGAAAACAACTTTTTCTCCTTGGGGATCACCAGCTTTTCTCTCAAAGATGAGTCCATTGATGAATTGGAAGAGGAACTGAAAAGGGTGACAGCAGAAAACAAGAAATTGGGGGAAATGCTCTCGGTTGTTTGCGAAAACTACAACGCTTTGAGAACCCATTTGATGGAATATATGAGTAGAAATCCTGAGAAGGAACTTAGCACAACATCCAAGAAAAGAAAATCCGAAAGCAGCAATAATAACAGTAATTTGATTGGAGTTAACAATGGAAACTCTGAAACTAGTTCTACCGATGAAGAATCGTGTAAGAAACCAAGGGAGGAAGAAATTATTAAACCCAAAATTTCAAGAGCTTGTGTTAGGACTGATGCATCCGATACCGGACTTATTATGAAGGATGGATACCATTGGAGGAAATATGGACAAAAAGTGACTAGAGATAACCCTTGTCCGAGAGCTTATTTCAAATGCTCTTTTGCTCCAAGCTGTCCTGTCAAAAAGAAGGTGCAAAGAAGTGTGGATGATCAATCTATGCTTGTTGCTACATACGAAGGGGAGCACAACCATCCTCAACCAGCTCCATTGGAATCAACGTCCGGTTCCGGCCGTAGCGCGAGCCTTAGTTCTATACCTTGTTCAGCGTCTCCAAGCTCAACAGCGCCAAAAGTTGTTACACTTGACTTAACAAATTCCAAGAGCAATAAAGATTCCAAGAACAATGAACCAAGGAAAGATTCACCAAAGGTACCAAAGAATTTGGTGGAACAAATGGCTACTTCTTTGACAACTGATCCAAATTTTAGAGCAGCACTTGTTGCAGCCATATCAGGAAGATTGATGCACAACAATTAA 939 0.4004 MDCSSYINTSLDLNITPYTVQQILPKKEVENNFFSLGITSFSLKDESIDELEEELKRVTAENKKLGEMLSVVCENYNALRTHLMEYMSRNPEKELSTTSKKRKSESSNNNSNLIGVNNGNSETSSTDEESCKKPREEEIIKPKISRACVRTDASDTGLIMKDGYHWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVDDQSMLVATYEGEHNHPQPAPLESTSGSGRSASLSSIPCSASPSSTAPKVVTLDLTNSKSNKDSKNNEPRKDSPKVPKNLVEQMATSLTTDPNFRAALVAAISGRLMHNN 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05668 312 Pfam WRKY DNA -binding domain 161 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g05668 312 MobiDBLite consensus disorder prediction 214 280 - -
Vifa2g05668 312 ProSiteProfiles WRKY domain profile. 159 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g05668 312 MobiDBLite consensus disorder prediction 87 136 - -
Vifa2g05668 312 MobiDBLite consensus disorder prediction 221 262 - -
Vifa2g05668 312 MobiDBLite consensus disorder prediction 102 125 - -
Vifa2g05668 312 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 41 308 IPR044810 GO:0003700
Vifa2g05668 312 MobiDBLite consensus disorder prediction 87 101 - -
Vifa2g05668 312 SMART WRKY_cls 160 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g05668 312 MobiDBLite consensus disorder prediction 263 279 - -
Vifa2g05668 312 SUPERFAMILY WRKY DNA-binding domain 158 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g05668 312 Coils Coil 41 68 - -
Vifa2g05668 312 Gene3D WRKY domain 144 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g05668 312 FunFam WRKY transcription factor 40 145 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05668 Vifa-Chr2 1681180267 1681181822 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05668 4 312 WRKY Transcription Factor Family AT1G80840 50.467 6.74e-93 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa2g05668 WRKY 2.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05668 - - gmx:100807966 427.557