Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05660 ATGCTTCCTCAGCGAATGAAGAAAGCCGTTACTGATAACCCTAAAAATCTCGCAAACTTGATCGATCTCGTTAACCTTCCTCCCACTCTCAGAGACTTCGTCGGATTGGAGAATTTAAACTTTGGCGACTTCAAGTTCGCTTCCGTTCCCAATCAACCACTCCCTTCCACCTCCGGTTGGGGCAACTTCGTCAACCATTCCAATCACATCAATGGCACCACCGTTTCAAAACCCTCTGATCCATTTACAGTTTCCCCGGATCCCCTCTGGAAAACCCCAAACAAAGCTCGCGGAGCTATTCCGCTTTCAATCTTCAGCGAGGAAGAAGATGATGAACCTGTTTCTGATTCCAGTTCCAATGATTTTTTCTCCAACGGTGGTGGTGCTGTTGTGAAAAAGGGATCCGATTCGAATGGTTCCGTTGGAATTAGTGATTTGATTTCCAATTTGTATCATCAGCAAAACGGATCAGCTTTGAAATCCAATGTCGGCTCTACCAGTCCGAAGAAATCGAGTGTAAACGATTTGAATCAGGATGAGGACGACGACGAGGACGATGGATGGGAATTCAAGTATGCAGAACGGGAAACTGTAAATGAAAACTTCAATGTTAAGGTTGAAACGCCCAAGCATGGTAACAGTGCAGTTGGAGCTGGTGCTTTGTTAGACTCATCTGACAAAGTTGGTGAACGGAACCTGGGGTTTGAGTTCAGTCCTATTTCTGCATCTCACAGCCTACAGCTAAGTCCGAAAGGTGAATCAAATGAAAATGGAGTTGGGTTTACCATGTCCAATCAAACTTTTGGGAAGTTGGCAAATGCACATTCATGGCCAGGATCAAATCAAACTTTGTCGCTATCTGGATCTCCTTCCAATTTCCAAGTTTACACTGCTTTATTGAAACCTCATGAGAGAATTATGGCACTCGATCTTCCCCATGGTGGGCATCTTTCACATGGATATCAGACTGACACCAAGAATATATCAGCCGTATCTATATTCTTTGAAACAATGCCGTACAGATTGGACGAGAGCACTGGTTATATTGATTATGACCAGATGGAGAAAAGTGCAGGAGATACAGGATTGATCATCGTTGGTGGGAGGATGGAAATGCAGCCACATATTTTTATGGATCCTTTTGAAGAAATGGGAATGGGAGCCAGATTTGCTGAGCAGCATCGAAGAAGTGCTAGTGAAAAGGAGGCTTCTGAGAACACTGGAACTGTGGTTCGTGTGGGTCTTCCAAAGAAGAACCCTAAAGTTTTGAAACCCGCTTTCACCATTCCTCCCAAACTGTTACAATCCCTTGTAGAAGACCCTAAATGGGATGAAAAAGGCAGCGTCACACAAAACTACAATTCCTTCGGCGCCAAGGAAAACATCAAAGAGATTCCATCTTTTCAAAGTAGAAAACTTCTTTTGGCATGCTCACTTAACTTGATGGCCTGCTACTTGAAGACAAGGCAGTATGATGAATGCATAAAAGAAGGTTCTGAGGTTTTGGCGTATGACGCAAAGAACCTGAAGGCTCTTTATCAAAGAGGCCAGGCATATAAGGAACGAGGCCTGCTACAGGATGCCGTCACTGATTTGAGCAATTCACTTGAAGTGTCTCCTGATGATGATATAATTGGAGAGCTTTTACGGGACACCAAGGAAAAGTTGATAAAGGAAGGTGGTCATTGTGCTCCTGGAAGATTAGTAATTGAAGAAATAACTGAAGAAGTTGAGAATGTGCCTTCTGGAAACAACAGAAACTCTTCTACCGAACAAACGATTGATCAACCAAAAAAGTCTGGCGACTCTTCTAAGAGTTACAATATAGCTAACAATGGAAATCTAAAATCAAATTCAGACAGTATAGATACACTGAAGAAAGATCCAGAAGCCATCAGATCATTCCAAAATTTCATTTCCAAAGCTGATCCTGCCACTCTGGCTTCTTTGAACATTGGGCAATCCCAAGACGTGTCTCCAGATATGATTAAAGCGTCCTCGGATATGATCGGCAAGATGTCACCCGAGGAACTTCAAAAAATGTTCGACATGGCATCTTCATTTCAAGGGAACAACCTATTTCTCAGAGGAGGTTCCTCTGATTCTCCTTTCAACTCTGGATCAGTTCCTCCCAATGTGACACCTGATATGCTTAAAACAGCAACTGATATGATAAGTAAAATGCCATCGGATGACCTTAAGAAGATGTTTGAAATGGCATCCTTAATGAAAGGGAAAGAATCTATTCCATCAGCAGCAGCTGTAGACAAGAAAGGAATAAATTTGTCACAGTCAAACTTCCCATCCTCAAGCACCACTCGTGCTTTTGGAGAATCAAGTTCTTCTGACAATGCGTTTTCAAATATTATAAATACTTCAGAGCCAAACTTCCCATCCTCAAGTACTGATTTACAAGAACAGATGAGAAACCAGATGAAAGATCCAGCTATGCGACAGGTATGTTCATAA 2469 0.4245 MLPQRMKKAVTDNPKNLANLIDLVNLPPTLRDFVGLENLNFGDFKFASVPNQPLPSTSGWGNFVNHSNHINGTTVSKPSDPFTVSPDPLWKTPNKARGAIPLSIFSEEEDDEPVSDSSSNDFFSNGGGAVVKKGSDSNGSVGISDLISNLYHQQNGSALKSNVGSTSPKKSSVNDLNQDEDDDEDDGWEFKYAERETVNENFNVKVETPKHGNSAVGAGALLDSSDKVGERNLGFEFSPISASHSLQLSPKGESNENGVGFTMSNQTFGKLANAHSWPGSNQTLSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKNISAVSIFFETMPYRLDESTGYIDYDQMEKSAGDTGLIIVGGRMEMQPHIFMDPFEEMGMGARFAEQHRRSASEKEASENTGTVVRVGLPKKNPKVLKPAFTIPPKLLQSLVEDPKWDEKGSVTQNYNSFGAKENIKEIPSFQSRKLLLACSLNLMACYLKTRQYDECIKEGSEVLAYDAKNLKALYQRGQAYKERGLLQDAVTDLSNSLEVSPDDDIIGELLRDTKEKLIKEGGHCAPGRLVIEEITEEVENVPSGNNRNSSTEQTIDQPKKSGDSSKSYNIANNGNLKSNSDSIDTLKKDPEAIRSFQNFISKADPATLASLNIGQSQDVSPDMIKASSDMIGKMSPEELQKMFDMASSFQGNNLFLRGGSSDSPFNSGSVPPNVTPDMLKTATDMISKMPSDDLKKMFEMASLMKGKESIPSAAAVDKKGINLSQSNFPSSSTTRAFGESSSSDNAFSNIINTSEPNFPSSSTDLQEQMRNQMKDPAMRQVCS 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05660 822 ProSiteProfiles TPR repeat profile. 509 542 IPR019734 GO:0005515
Vifa2g05660 822 MobiDBLite consensus disorder prediction 579 622 - -
Vifa2g05660 822 MobiDBLite consensus disorder prediction 158 185 - -
Vifa2g05660 822 Gene3D Tetratricopeptide repeat domain 448 560 IPR011990 GO:0005515
Vifa2g05660 822 PANTHER TPR_REGION DOMAIN-CONTAINING PROTEIN 712 820 - -
Vifa2g05660 822 SMART tpr_5 509 542 IPR019734 GO:0005515
Vifa2g05660 822 SMART tpr_5 475 508 IPR019734 GO:0005515
Vifa2g05660 822 MobiDBLite consensus disorder prediction 579 620 - -
Vifa2g05660 822 SUPERFAMILY TPR-like 471 550 IPR011990 GO:0005515
Vifa2g05660 822 SUPERFAMILY PLP-dependent transferases 285 370 IPR015424 -
Vifa2g05660 822 Pfam Serine hydroxymethyltransferase 285 361 IPR039429 -
Vifa2g05660 822 MobiDBLite consensus disorder prediction 158 173 - -
Vifa2g05660 822 MobiDBLite consensus disorder prediction 762 822 - -
Vifa2g05660 822 MobiDBLite consensus disorder prediction 762 809 - -
Vifa2g05660 822 Gene3D - 265 384 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05660 Vifa-Chr2 1679274691 1679280892 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05660 469 556 Calmodulin-binding Proteins AT5G48570 38.636 8.22e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05660 - - lja:Lj3g3v2923190.2 566.229