Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05658 ATGTTGTATAAAAATTCAAAATTCTCAAGTAATTATTGTGAAAGAAGCAAATTGGATAGAAATTTGAGTCTCACTGAACTTAACGCCGTCGGCTGCCAGAAACAAAAGAAAGCTTGTTTTTTCAAATCTACTAGGAAAATGTCAGGTGAGGAAGCTGTTGTTGTAGCTGAGCCTGTTGCTGCTGCCGCACCTGGAATTCCAGGTGAGCCAATGGACATTATGACTGCCTTGCAACTTGTGCTCAGGAAGTCACTGGCATATGGAGGTCTTGCACGCGGCCTTCACGAAGGTGCAAAAGTAATTGAGAAGCACGCAGGACAACTTTGTGTTCTTGCAGAAGACTGTGACCAACCTGACTATGTTAAACTAGTCAAGGCTCTTTGTGCTGAGCACAATGTTAGCCTGCTGACAGTTCCCAGTGCAAAGACACTTGGAGAATGGGCTGGTCTGTGCAAGATTGATTCCGAGGGAAAAGCTAGAAAAGTTACTGGCTGCTCCTGTGTGGTTGTCAAGGATTTCGGGGAGGAGCATGAAGCCTACAATGTTGTTCTGCAGCACGTGAAAGCTCAATAA 573 0.4485 MLYKNSKFSSNYCERSKLDRNLSLTELNAVGCQKQKKACFFKSTRKMSGEEAVVVAEPVAAAAPGIPGEPMDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAQ 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05658 190 Gene3D - 56 190 IPR029064 -
Vifa2g05658 190 PRINTS Ribosomal protein S12E family signature 80 93 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vifa2g05658 190 PRINTS Ribosomal protein S12E family signature 94 110 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vifa2g05658 190 PRINTS Ribosomal protein S12E family signature 160 173 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vifa2g05658 190 PRINTS Ribosomal protein S12E family signature 135 156 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vifa2g05658 190 FunFam 40S ribosomal protein S12 56 190 - -
Vifa2g05658 190 SUPERFAMILY L30e-like 70 188 IPR029064 -
Vifa2g05658 190 PANTHER 40S RIBOSOMAL PROTEIN S12 64 189 - -
Vifa2g05658 190 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 76 169 IPR004038 -
Vifa2g05658 190 ProSitePatterns Ribosomal protein S12e signature. 76 94 IPR000530 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05658 Vifa-Chr2 1678277169 1678279664 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05658 66 190 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 72.800 3.42e-64 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05658 K02951 - gmx:100786733 255.758