Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05652 ATGGATACTACAAAACAAAAACATGAATCATCTTCCCAACTTGTACTTGATCTAAGTCTCTCTAGCAAAGATTCATGTGACGATGAATCAAAGCCGGAACTAAACCTCCTCAATTGTTTCCATGAAAATTTATTAGAAAGCTCGTCGGAATCAAGTCATGAAAATGAACTTGATCCAAGAGTTTTCTCATGCAACTACTGCCAGAGAAAATTCTATAGCTCGCAAGCTCTAGGAGGACACCAGAATGCTCATAAGCGCGAAAGAACTTTGGCGAGAAGAGGCTTTACAACTAGCATGGCTTCTTCTCTTCCTTCTTACGGCTTATGTAACAACTCACTTGGAATTCAAGTGCATTCTATGATTAACAAACCTTCTTATCAAACACAAACACCCTTTTTTGGATTTTGTTCAAATGGACAGAATGGTTGGAAAAGACAGATTTTTGATTCACAGCCAGCAATCGGAAAGCCTCCATCTGGAAACTTTCATGTGAGGAATGAAACTGAACCATCTTTTGGCAGTGGCATTCAAAGGGTAGCTATGTTTCCTAAAAGTCTTGTGAATGAAGAATTTGGACTTGGAGGATACTTATTGGATAACAGCATTTCACATTTGAAGTCTAAACAAGAGAAGTTGCAGAAACTTGACTTGTCCCTTAAGCTCTAA 666 0.3844 MDTTKQKHESSSQLVLDLSLSSKDSCDDESKPELNLLNCFHENLLESSSESSHENELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGFTTSMASSLPSYGLCNNSLGIQVHSMINKPSYQTQTPFFGFCSNGQNGWKRQIFDSQPAIGKPPSGNFHVRNETEPSFGSGIQRVAMFPKSLVNEEFGLGGYLLDNSISHLKSKQEKLQKLDLSLKL 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05652 221 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 4 221 IPR044246 GO:0009788
Vifa2g05652 221 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Vifa2g05652 221 Gene3D Classic Zinc Finger 41 103 - -
Vifa2g05652 221 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 89 IPR013087 -
Vifa2g05652 221 FunFam Zinc finger protein 2 41 106 - -
Vifa2g05652 221 SUPERFAMILY beta-beta-alpha zinc fingers 59 89 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05652 Vifa-Chr2 1677196778 1677197443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05652 14 221 C2H2 Transcription Factor Family AT5G10970 40.541 4.30e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa2g05652 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05652 - - mtr:25491181 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05652 2 1677196778 1677197443 Vifa2g05652 2 1677196778 1677197443 ECH