Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05640 ATGGCCAGACCTCAACAACGTTATCGAGGTGTTAGACAAAGGCATTGGGGTTCTTGGGTCTCTGAAATTCGTCACCCTTTACTGAAAACAAGAATATGGTTAGGAACATTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGATTAATGTGTGGACCAAAAGCACGTACAAATTTCCCATACAATCCAAATGGACCACAATCTTCTTCATCTAAGCTTCTTTCACCTACTTTAACTGCAAAGCTAAACAAATGTCACATGGCTTCTCTTTCTCTTCAAATGTCCAAACAACCTCAAAAAGAGACACAGCAACATGTTTCAACACAAAGTTTCAATTCTTGTTCGGTTAACAATAGTGGTTTTGTGTATGGTAATGATGACATTGGAAGCGGAACAAGTGATGAGAGTGGTTTAATTAGATGGCTTGATGAAGGGAATGGTTTTGTTGGTTTTGAAAATCATCATGTTGAAGTTTCTCATCAGCAATTTCAACCTGTTCTTGAAGATGATCATATTGAACAAATGATTCAAGAGTTGCTTGATTCTGGTTGCTCAATCGAGATTTGTTCCGTTGCTTCATCTTAG 597 0.3836 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNGPQSSSSKLLSPTLTAKLNKCHMASLSLQMSKQPQKETQQHVSTQSFNSCSVNNSGFVYGNDDIGSGTSDESGLIRWLDEGNGFVGFENHHVEVSHQQFQPVLEDDHIEQMIQELLDSGCSIEICSVASS 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05640 198 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 109 - -
Vifa2g05640 198 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Vifa2g05640 198 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Vifa2g05640 198 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Vifa2g05640 198 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Vifa2g05640 198 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Vifa2g05640 198 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Vifa2g05640 198 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Vifa2g05640 198 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Vifa2g05640 198 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05640 Vifa-Chr2 1673970873 1673971612 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05640 1 195 AP2-EREBP Transcription Factor Family AT5G25190 61.538 6.84e-72 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa2g05640 AP2 8.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05640 - - gmx:100777851 239.58