Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05635 ATGAACATTGAAAACTTCTCATACGACCCCTCAAAAACAACCACAACCACAACAACGTTAAATCTTCCGAAACACAATCCATACTTCTCATTTCATCAAACATCTCTCGAAGGAATCGCCGCGGTTGTCGGAGAACAAATCCTCTTCGGATCCCACCACACCAACGCCGTTTCACATCCCATAACCACAACAGAACTCCCAAAAACCAACACCATTCCATTAAGCAAGAGCTACAGAGGAGTAAGAAAACGACCATGGGGAAGATGGTCAGCGGAAATCCGCGACAGAATCGGTCGGTGCCGTCACTGGCTAGGAACATTCGACACGGCTGAAGAAGCGGCGCGTGCCTACGACGCAGCAGCTAGGCGACTGAGAGGCTCTAAGGCTAGGACAAACTTTAAGATACCGTCTGTTTTGCCTATACCGTTATCACCAAACTCGAATGAGTCTTGTTCTTCTTCTGAAACTAACGGTAAGAAGAAAACTGTGCGGAACAGTGTTAGGAAGTGTTGCGTTGTTAGTTCTGTTGGAGAGTTGTTCAGTGGTGTACCTGAGGTTCGAAGAGAAAGGGATAGTAATGGTAATGTAGTTGAGTTTGGTGGTATAAGCAGTACTAGAATGGTGGCGTAG 630 0.4651 MNIENFSYDPSKTTTTTTTLNLPKHNPYFSFHQTSLEGIAAVVGEQILFGSHHTNAVSHPITTTELPKTNTIPLSKSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFKIPSVLPIPLSPNSNESCSSSETNGKKKTVRNSVRKCCVVSSVGELFSGVPEVRRERDSNGNVVEFGGISSTRMVA 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05635 209 CDD AP2 76 135 IPR001471 GO:0003700|GO:0006355
Vifa2g05635 209 Pfam AP2 domain 77 126 IPR001471 GO:0003700|GO:0006355
Vifa2g05635 209 PRINTS Ethylene responsive element binding protein signature 100 116 IPR001471 GO:0003700|GO:0006355
Vifa2g05635 209 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Vifa2g05635 209 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 55 158 - -
Vifa2g05635 209 Gene3D AP2/ERF domain 76 135 IPR036955 GO:0003700|GO:0006355
Vifa2g05635 209 FunFam Ethylene-responsive transcription factor 2 76 135 - -
Vifa2g05635 209 SUPERFAMILY DNA-binding domain 77 134 IPR016177 GO:0003677
Vifa2g05635 209 SMART rav1_2 77 140 IPR001471 GO:0003700|GO:0006355
Vifa2g05635 209 ProSiteProfiles AP2/ERF domain profile. 77 134 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05635 Vifa-Chr2 1671291309 1671291938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05635 32 140 AP2-EREBP Transcription Factor Family AT1G80580 63.964 6.40e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa2g05635 AP2 1.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05635 - - cam:101490906 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05635 2 1671291309 1671291938 Vifa2g05635 2 1671291309 1671291938 ECH