Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05634 ATGGAAGACACATGGGGAAAATTTCTTCTTAACATGGAATTGGAATGCGGTGATGATTACTTCATAGACAACTTGGAGTTGGACAGCATTAACATTGACAGTGATGACTTTCTTAGAGAGATTCTGTTAGAAACACCACAAAGTTTAAACTATTCTGAAAGTGAAAATGATTCAGTTACCATTGACATTAACGGCGGTGTTGACGTTGTTAATAACATGGTAAAAAGTATGAGTTCAAATTCAGTAGTGTCTGAACAACATCACCAACAAGAACAAGAACAATCTAAAAATGTCGGTGGTCGAAGTAGTTTACCAAAGACATTCATTTTGTCTTTTGATAACTCAACTATAATACCTGCTACATCTCAACCAGCATGTGTCAATTTGGATGCTAAACGTGGTTCTAAGAAGAAACGGAACCGTGAAAGTAGTGAAAAGAGTGAAATGATGAAAGGAAATGAAGAAAAAGTAGTCAAGAGAAGTAGAAGCAGTTCTCAGTGTGTTGATCACATAATGGCAGAGAGAAAACGGAGACAAGAATTGACGGAGAGATTCATCGCACTTTCAGCAACCATTCCCGGATTGAGCAAGACAGACAAAGCTTCCATACTTCAAGCAGCAATTGATTATGTAAAACATCTTCAACAACGTGTTGATGATCTAGAGAAACAAGACAAAAACGTTGGTGTCACGTCAATGATGGTCCTCAACAAACCTAATCCATCTAGAATTATTAACAATAATGAAGACAAAAATTTTGGTCAAACAAGTAGTGATGATGATAATGATAATGATGATGGTTTTAACAATAATATAATCCCAGAGATTGAAGCAAGAGTTATGGGAAAGGAAGTGCTTATTGAAATTCATTGTGAGAAACAAATTGGAATTGAGCTTAGAGTACTTAAACACATCGAAAATCTTAAGCTTTTTGTTACTGGTAGCAGTGTCTTGCCATTTGGAGAATCAGATCTTTTCTTTACTATTATTGCTCAGATGGATGAGGGATACAAAGTGACAGTGAATGATTTAATGCAAAGTCTTAGACAAATGCTTTTGAAGCCTCAAATGGGATGTGAAAATGATCTGTTCTAG 1095 0.3571 MEDTWGKFLLNMELECGDDYFIDNLELDSINIDSDDFLREILLETPQSLNYSESENDSVTIDINGGVDVVNNMVKSMSSNSVVSEQHHQQEQEQSKNVGGRSSLPKTFILSFDNSTIIPATSQPACVNLDAKRGSKKKRNRESSEKSEMMKGNEEKVVKRSRSSSQCVDHIMAERKRRQELTERFIALSATIPGLSKTDKASILQAAIDYVKHLQQRVDDLEKQDKNVGVTSMMVLNKPNPSRIINNNEDKNFGQTSSDDDNDNDDGFNNNIIPEIEARVMGKEVLIEIHCEKQIGIELRVLKHIENLKLFVTGSSVLPFGESDLFFTIIAQMDEGYKVTVNDLMQSLRQMLLKPQMGCENDLF 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05634 364 MobiDBLite consensus disorder prediction 128 163 - -
Vifa2g05634 364 MobiDBLite consensus disorder prediction 78 102 - -
Vifa2g05634 364 PANTHER BHLH TRANSCRIPTION FACTOR 37 354 - -
Vifa2g05634 364 MobiDBLite consensus disorder prediction 239 268 - -
Vifa2g05634 364 Gene3D - 163 233 IPR036638 GO:0046983
Vifa2g05634 364 Coils Coil 204 224 - -
Vifa2g05634 364 SMART finulus 171 220 IPR011598 GO:0046983
Vifa2g05634 364 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 225 IPR036638 GO:0046983
Vifa2g05634 364 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 214 IPR011598 GO:0046983
Vifa2g05634 364 Pfam Helix-loop-helix DNA-binding domain 167 215 IPR011598 GO:0046983
Vifa2g05634 364 MobiDBLite consensus disorder prediction 239 253 - -
Vifa2g05634 364 MobiDBLite consensus disorder prediction 131 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05634 Vifa-Chr2 1670728024 1670729387 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05634 161 352 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 43.229 1.17e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa2g05634 HLH 7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05634 - - psat:127105379 441.81