Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05632 ATGGAGGAGCCAGGAGAAAACTGGCCTTCTGATTTGGAAAAATGTGATGACATCATTTTGGAAGATGATGAGAGGGAACTCAAAGAGAGATTCTTGGCACTTTCAGCAGCTATAGGCTTGAAGAAGACAAAATTAGACAAAGCTTCAATCCTAGACAAAGCTAAACACTACGTGAAGCAACTTCAAGAACGAATGAAAGATTTAGAACAAGAAGTTAGATCCAACACTTGTAGCAACAATTGTGAAACAAGTACTAGTATTGTTCCTGATGTGGAAGTCGAAGTGTTACAAAAGGAAATTCTCCTCACAATCCATTGTGAGAAACAAAAGAATGTCATGCTTAAAATACTTACTCATCTAGAAAATGTTCATCTTTCAGTAGTGAGTAGTAGTGTTTTGCAATTCGGAAAATCCACCCTTGACATCACCATAGTTGCCCAGATGCGTGATGGATACAATATTACTATCGAGGAATTAGTGAAAACCCTCATAATAGTGATCATGACATCATGTAGTATATGA 522 0.3716 MEEPGENWPSDLEKCDDIILEDDERELKERFLALSAAIGLKKTKLDKASILDKAKHYVKQLQERMKDLEQEVRSNTCSNNCETSTSIVPDVEVEVLQKEILLTIHCEKQKNVMLKILTHLENVHLSVVSSSVLQFGKSTLDITIVAQMRDGYNITIEELVKTLIIVIMTSCSI 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05632 173 Coils Coil 51 78 - -
Vifa2g05632 173 SMART finulus 21 67 IPR011598 GO:0046983
Vifa2g05632 173 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 26 78 IPR036638 GO:0046983
Vifa2g05632 173 Gene3D - 24 83 IPR036638 GO:0046983
Vifa2g05632 173 Pfam Helix-loop-helix DNA-binding domain 27 62 IPR011598 GO:0046983
Vifa2g05632 173 PANTHER BHLH TRANSCRIPTION FACTOR 26 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05632 Vifa-Chr2 1670427422 1670428374 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05632 16 163 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.791 5.24e-25 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa2g05632 HLH 0.00018 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05632 - - psat:127105380 222.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05632 2 1670427422 1670428374 Vifa2g05630 2 1669580213 1669581688 PCT
Vifa2g05629 2 1669328385 1669334814 Vifa2g05632 2 1670427422 1670428374 PCT