Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05631 ATGGAAGAGTCATTCGAAAATTTCCTTCTTCACATGGAATTGGATTGCGGTGATGATTACTTCATAGACAACTTGGAGTTGGACACCATTAACATTGAGAGTGATGACTTTCTTAGAGAGATTCTGTTAGAAACACCACAAAGTTTAAACTATTCTGAAAGTGAAAATGATTCAGTTACCATCGACATTAACGGCGGTGTTGATGTTGTTAATAATATGGTAAAAAGTAACAGTTCAAATTCAATAGTATCTGAAAAACAAGAACAATCAAAAAACGTTGGTGGTCAAAGTTGTTTACCGAAGACATTCATTTTGTCTTTTGATAACTCAACTATAGTACCTGTTACATCTGAACCATGTGTGAATTTGGAAGCTAAACGTGATTCTAAGAATAAAGGGAAGCGTGAATGCAGTGAAAAGGGTGAAATGATGATGAAAAGAAATGAAGAAAAGGGAAGGAAGAAAGGTAGAAAGAGTTCTGAGTGTGTTGATCATATAGTGGCAGAGAGAAAACGGAGACAGGAATTGACGGAGAGATTCATCGCACTTTCAGCAACCATTCCCGGATTGAGCAAGGTAGATAAAGCTTCCATACTTCTAGCAGCAATTGATTATGTAAAACAACTTCAAGAACGTGTTCATGAGCTAGAAAAACAAGACAAAACCGTTGGTGTATGTGGAATTTTTAACAATAATGCAGACAAAAGTTCTGGTGAAACAAATACTGATGAGGATGATTGTAACAATAATATTCTCCCAGAGATTGAAGCAAGAGTTATGGAAAAGGAAGTGCTTATTGAAATTCATTGTGAGAAACAAATTGGAATTGAGCTTAGAGTACTTAAACACATCGAAAATCTTAAGCTTTTTGTTACTGGTAGCAGTGTCTTGCCATTTGGGAAATCAAATATTTCCATTACTATTATTGCTCAGAGGAGTGAGGGATACAGAGGGACAATGGATGATCTTGTGAAAGGCCTTAGGCAAGTGATTTTGAAACTTGGAATGGGACAAGAAAGTGATTTATTCTAG 1032 0.3595 MEESFENFLLHMELDCGDDYFIDNLELDTINIESDDFLREILLETPQSLNYSESENDSVTIDINGGVDVVNNMVKSNSSNSIVSEKQEQSKNVGGQSCLPKTFILSFDNSTIVPVTSEPCVNLEAKRDSKNKGKRECSEKGEMMMKRNEEKGRKKGRKSSECVDHIVAERKRRQELTERFIALSATIPGLSKVDKASILLAAIDYVKQLQERVHELEKQDKTVGVCGIFNNNADKSSGETNTDEDDCNNNILPEIEARVMEKEVLIEIHCEKQIGIELRVLKHIENLKLFVTGSSVLPFGKSNISITIIAQRSEGYRGTMDDLVKGLRQVILKLGMGQESDLF 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05631 343 PANTHER BHLH TRANSCRIPTION FACTOR 39 333 - -
Vifa2g05631 343 Gene3D - 157 224 IPR036638 GO:0046983
Vifa2g05631 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Vifa2g05631 343 MobiDBLite consensus disorder prediction 127 161 - -
Vifa2g05631 343 Pfam Helix-loop-helix DNA-binding domain 164 210 IPR011598 GO:0046983
Vifa2g05631 343 SMART finulus 166 215 IPR011598 GO:0046983
Vifa2g05631 343 Coils Coil 199 219 - -
Vifa2g05631 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 220 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05631 Vifa-Chr2 1670104808 1670134757 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05631 130 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.437 6.20e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa2g05631 HLH 2.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05631 - - psat:127105379 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05631 2 1670104808 1670134757 Vifa2g05629 2 1669328385 1669334814 PCT