Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05630 ATGGAAGATTCATGGGAAAATTTCAATCTTCACATGGAATTGGATTGTGGTGATGATTACTTGATAGACAACTTGGACTTGGACACCATTAACATTGATGGTGATGATTTTCTTAGAGAGATTCTGTTAGAAACACCACAAAGTTTAATCTATACTGAAACTGAAAATAAATCCGATATCGTTGACATTAACGACGGCGTAGAGGTTGTTAATAACAGTTCTGGTTCAACAATAGTACTGTCTGAACAACAAAAACAAGAACAAGAACAAGAACAATCGAAAAATATTTCTGGTCGATGTTATTTACCAAAGACATTCATTTTGTCTTTTGATAACTCAACTGTGATACCTGTTACACCTCAACCATCATGTGTTAATTTGGACGCTAAACGTGATTCTAAGAATAAAAGGAGGCGTGAAAGTGGTGAAAAGAATGAAATGATGAAAAGAAATGAAGAAAAAGTAGTCAAGAGAAGTAGAAGCAGTTCTCAGTGCAATGATCATATAATAGCAGAGAGAAAACGGAGACAAGAGTTGACGGAAAGATTCATCGCACTTTCAGCAACCATTCCTGGTTTGAGCAAGACAGATAAAGCCTCAATACTTCGAGCAGCGATTGATTACGTGAAGCATCTTCAAGAACGTGTTGATGACCTAGAGAAACAAGACAAAAACGTTGGTGTCACGTCAATGATGGTCCTCAACAAACCTAATCTACGTGGAATTATTAACAATAATCAAGACAAAAAATTTAGTCAAACAAATAGTGATGATGATGATGATGATTTTAACAATAATATCTTCCCAGAGATTGAAGCAAGAGTTATGGGAAAGGAAGTGCTTATTGAAATTCATTGCGAGAAACAAATTGGAATTGACCTTAAAGTGCTAAAACACATTGAAAATCTTCACCTTTTTGTTATTGGTAGCAGTGTCTTGCCATTTGGAACATCAGATCTTTCCATTACTATTATTGCTCAGATGGGCGAAGGATACAAAGTGACAATGGATGATCTTGTTATAAGCCTTAGGCGAGTGATTCTGAAACCTGAAATGGGATGTGAAAGTGATCTATTCTAG 1080 0.3574 MEDSWENFNLHMELDCGDDYLIDNLDLDTINIDGDDFLREILLETPQSLIYTETENKSDIVDINDGVEVVNNSSGSTIVLSEQQKQEQEQEQSKNISGRCYLPKTFILSFDNSTVIPVTPQPSCVNLDAKRDSKNKRRRESGEKNEMMKRNEEKVVKRSRSSSQCNDHIIAERKRRQELTERFIALSATIPGLSKTDKASILRAAIDYVKHLQERVDDLEKQDKNVGVTSMMVLNKPNLRGIINNNQDKKFSQTNSDDDDDDFNNNIFPEIEARVMGKEVLIEIHCEKQIGIDLKVLKHIENLHLFVIGSSVLPFGTSDLSITIIAQMGEGYKVTMDDLVISLRRVILKPEMGCESDLF 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05630 359 Gene3D - 161 230 IPR036638 GO:0046983
Vifa2g05630 359 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 223 IPR036638 GO:0046983
Vifa2g05630 359 Coils Coil 202 222 - -
Vifa2g05630 359 MobiDBLite consensus disorder prediction 244 263 - -
Vifa2g05630 359 MobiDBLite consensus disorder prediction 121 166 - -
Vifa2g05630 359 Pfam Helix-loop-helix DNA-binding domain 165 213 IPR011598 GO:0046983
Vifa2g05630 359 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 212 IPR011598 GO:0046983
Vifa2g05630 359 PANTHER BHLH TRANSCRIPTION FACTOR 81 349 - -
Vifa2g05630 359 SMART finulus 169 218 IPR011598 GO:0046983
Vifa2g05630 359 MobiDBLite consensus disorder prediction 129 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05630 Vifa-Chr2 1669580213 1669581688 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05630 145 347 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 43.842 4.08e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa2g05630 HLH 6.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05630 - - psat:127105379 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05632 2 1670427422 1670428374 Vifa2g05630 2 1669580213 1669581688 PCT