Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05629 ATGGAGGAATCCGGAGAAAATTGGCCTTCTGATTCTGATTTGGGTTTATGTGTTGACGTTATTTTTGATGATGGCGATGATTTAAATGAGAAGGGTTTATCAGAGAAGATGCTGGAACTTTCAGCCACCATTCCTGGCTCGAATAAGATGGACGATGCTTCGATCTTGGACAAGGCTAGAAACTATGTGAAACAACTTCAAGAACGTGTTAAAGAGCTAGAACACGAAGCTGAATCCAACAAGATTTGTCGCAACAATAGTGAAATAAGTATTGATATTCTTCCTTTGGTCAAAGCAAAAGTGTCAAAAATGGAAGTTCTCATCACAATCCATTGTGAGAAACAAAATGGTGTCGTGCTCAAAATATTGACCCAGCTTGAAAAACTTCATCTTTCAGTAAAGAGTAGCAGCGTCTTGGAACTTGGAAAATCCACTTTTGGCATCACCATTGTTGCCCAGATTTAA 465 0.3892 MEESGENWPSDSDLGLCVDVIFDDGDDLNEKGLSEKMLELSATIPGSNKMDDASILDKARNYVKQLQERVKELEHEAESNKICRNNSEISIDILPLVKAKVSKMEVLITIHCEKQNGVVLKILTQLEKLHLSVKSSSVLELGKSTFGITIVAQI 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05629 154 Coils Coil 56 83 - -
Vifa2g05629 154 Gene3D - 30 90 IPR036638 GO:0046983
Vifa2g05629 154 SMART finulus 27 72 IPR011598 GO:0046983
Vifa2g05629 154 PANTHER BHLH TRANSCRIPTION FACTOR 33 153 - -
Vifa2g05629 154 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 32 82 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05629 Vifa-Chr2 1669328385 1669334814 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05629 33 154 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22760 36.806 3.56e-21 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05629 - - tpra:123921504 160.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05631 2 1670104808 1670134757 Vifa2g05629 2 1669328385 1669334814 PCT
Vifa2g05629 2 1669328385 1669334814 Vifa2g05632 2 1670427422 1670428374 PCT