Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05628 ATGGAGGAGTCCGGAGAAAATTGGCCTTGTGATTCTGATTTGGAAATTTGTGATGATGGTTTTTTTGAAGACGGAGAATCTGAATCGTTTGATGATGAAATTGGAGATTCCACCGACAGAAATGGAAGATATGAGAGGGACCTTAGAGAAAAAATGCTGACACTTTCAGCCATCATACCTGGTTTGAAAAAGATGGACGACACTTCGATCCTAGAAAAAGCTAGACAGTATGTGAAACAACTTCAAGAACGTGTTAAAGAGCTAGAAAAAGATGTTGGATCAAACAATAATTATAGCGACAATTGTGGATCAAGTAATAATATTCTTCCCGATGTGGAAGCAGTAGTGTTACAAAAGCAAGTTCTTATCACAATCCACTGTGAGAAACAAAAGAGTGTTATGCTCAAAATACTTACCCAACTTGAAAATCTTCATCTTTCAGTAGTGAGTAGCAGTGTTTTGCAATTTGGAAAATCTACCCTTGACGTAACCATCGTTGCCCAGATGGGTGATGGATACAACATTAGAGTGGATGAACTAGTGAAAACACTCAGAAGAGTGATCTTGACACAATAG 576 0.3802 MEESGENWPCDSDLEICDDGFFEDGESESFDDEIGDSTDRNGRYERDLREKMLTLSAIIPGLKKMDDTSILEKARQYVKQLQERVKELEKDVGSNNNYSDNCGSSNNILPDVEAVVLQKQVLITIHCEKQKSVMLKILTQLENLHLSVVSSSVLQFGKSTLDVTIVAQMGDGYNIRVDELVKTLRRVILTQ 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05628 191 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 32 81 IPR011598 GO:0046983
Vifa2g05628 191 PANTHER BHLH TRANSCRIPTION FACTOR 47 189 - -
Vifa2g05628 191 SMART finulus 42 87 IPR011598 GO:0046983
Vifa2g05628 191 Coils Coil 71 98 - -
Vifa2g05628 191 Gene3D - 39 101 IPR036638 GO:0046983
Vifa2g05628 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 95 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05628 Vifa-Chr2 1668835652 1668836524 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05628 45 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.462 1.32e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05628 - - tpra:123921504 187.578