Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05599 ATGGCAAGTATTTGTGGCATACGTAAATATTGGATGCTACTATCTAATCGGCACTTGGAATTTTATAAAAGTGCACTTCCTCAACCTTTGACTTCGATTCAGCGTCTTTATATTAGTCGGCTAGTTGAGAAATATGGAGCTGATTTTCAGAGAATGATGATGGATATAAAGCTAAATCCTATGCAGCATTCTGTTGCAACTTTAGAGAAATTGTATTTTGGTTGTTTTGACACTTTGGATGTTGCTCGGGCCAAGGAAAACATCAAAGAGATTCCATCTTTTCAAAGTAGAAAACTTCTTTTGGCATGCTCACTTAACTTGATGGCCTGCTACTTGAAGACAAGGCAGTATGATGAATGCATAAAAGAAGGTTCTGAGGCTTGTGATCACCCACTTCTTGTTAAAGAATACAATTCTGATCCTGTTGGAAAAGATTCTGTTGAAATGGCAAAAAGGCTTCCAAAAGAGATGCTGATAAATCTGTTTAATAGTTTGGAAACAACTGCCGCTATATGTTTTGTCTGCAATAGGCCAGAGAATAAGCTTGGAGATGATGAAACGTGGGATAGGGCTGAAAGTGCTCTCAAGGAGGCTTTGGATGAGTTTGGCAAGCCATGGCAGTTGAATGAAGGGGATGGTGCATTCTATGGACCAAAGATAGATATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTCTACAGCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGATGAAGCCAAAATTGAGAGGCCTGTTATGATACACAGAGCCATTCTAGGATCAGTTGAACGCATGTTTGCCATACTTTTAGAGCACTACAAGGGTAAATGGCCCTTCTAG 873 0.3998 MASICGIRKYWMLLSNRHLEFYKSALPQPLTSIQRLYISRLVEKYGADFQRMMMDIKLNPMQHSVATLEKLYFGCFDTLDVARAKENIKEIPSFQSRKLLLACSLNLMACYLKTRQYDECIKEGSEACDHPLLVKEYNSDPVGKDSVEMAKRLPKEMLINLFNSLETTAAICFVCNRPENKLGDDETWDRAESALKEALDEFGKPWQLNEGDGAFYGPKIDISVSDALSRKFQCATLQLDFQLPDRFKLEFSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPF 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05599 290 Gene3D Bira Bifunctional Protein; Domain 2 144 288 IPR045864 -
Vifa2g05599 290 SUPERFAMILY Class II aaRS and biotin synthetases 156 281 IPR045864 -
Vifa2g05599 290 PRINTS Threonyl-tRNA synthetase signature 262 275 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vifa2g05599 290 PRINTS Threonyl-tRNA synthetase signature 218 246 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vifa2g05599 290 Gene3D Tetratricopeptide repeat domain 66 138 IPR011990 GO:0005515
Vifa2g05599 290 PANTHER THREONINE-TRNA LIGASE 176 290 - -
Vifa2g05599 290 Pfam Ribosome biogenesis protein Nop16 24 71 IPR019002 -
Vifa2g05599 290 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 144 284 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05599 Vifa-Chr2 1660376789 1660379394 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05599 126 181 RAD5 or RAD16-like Gene Family AT3G20010 57.143 8.37e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05599 K01868 - gmx:100812652 224.172