Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05598 ATGAAATTTCATAGTCGAAGTACCTGGCACTCTTTGTTTACTAGGAATCAAACCTTCCTCATTTGTAAGAAATCTCTTTTGAACTCTTTAAATGATGTAGTTGAAGCTGCGGTTGCATGGGAAGCTGGGAAGCCACTGGTGATTGAAGAAGTAGAGGTGGCGCCACTGCAGGCCGGTGAAGTTCGTCTCAAGATACTCTTCACCTCCCTTTGTCACACTGATGTTTACTTTTGGGAAGCTAAGGGTCAGACTCCATTGTTTCCTCGTATTTTTGGTCATGAAGCTGGAGGGATCGTGGAGAGCGTAGGTGAAGGTGTGACTCATCTGAAACCAGGGGATAAAGCCCTGCCTGTATTCACAGGGGAGTGTGGTGAATGTCCACATTTGGTTCATGCTGGATGTGTTGCAAAGATCAATCCTGAAGCACCACTTGACAAAGTTTGTATTCTCAGTTGTGGAATATGCACAGGTCTTGGTGCTACTGTGAATGTTGCAAAACCAAAGCCAGGTTCTTCAGTTGCTATCTTTGGGCTTGGAGCTGTTGGCCTTGCTGCTGCTGAAGGTGCAAGGATCTCTGGTGCATCAAGAATCATTGGAGTTGATTTAGTTTCCAGCCGATTTGAATTAGCTAAGAAGTTTGGAGTGAATGAGTTCGTGAACCCGAAAGTAGATTAA 675 0.4489 MKFHSRSTWHSLFTRNQTFLICKKSLLNSLNDVVEAAVAWEAGKPLVIEEVEVAPLQAGEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDKALPVFTGECGECPHLVHAGCVAKINPEAPLDKVCILSCGICTGLGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFELAKKFGVNEFVNPKVD 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05598 224 SUPERFAMILY GroES-like 34 161 IPR011032 -
Vifa2g05598 224 Pfam Alcohol dehydrogenase GroES-like domain 59 128 IPR013154 -
Vifa2g05598 224 PANTHER ALCOHOL DEHYDROGENASE 129 222 - -
Vifa2g05598 224 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 92 106 IPR002328 GO:0008270|GO:0016491
Vifa2g05598 224 Gene3D - 129 156 - -
Vifa2g05598 224 Gene3D - 157 222 - -
Vifa2g05598 224 FunFam S-(hydroxymethyl)glutathione dehydrogenase 157 224 - -
Vifa2g05598 224 Pfam Zinc-binding dehydrogenase 180 222 IPR013149 -
Vifa2g05598 224 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 143 222 IPR036291 -
Vifa2g05598 224 Gene3D - 37 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05598 Vifa-Chr2 1660375342 1660376762 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05598 60 126 Monolignol Biosynthesis Gene Families AT4G39330 38.235 4.46e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05598 K18857 - gmx:100801918 335.88