Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05590 ATGAATATTTCTATTGGATGTGCTGATGGAATTGTATACCTTCACCACCAAGCAACGCCTCATATCGTCCATATGGATATCAAACCAAGTAGTGTGTTGTTGAATTTGGATTTCCAAGCCTTAATTTCTGGTTTCAGGTTTGCTACGATAGTCACTAATGGGGAAACACAAGTCACTAGAGATGTTGTTAAAGGTAACATATGCTACCTTGCACCAGGATTTATGTCAGGTAAAGTAAATGAAAGTTGTGATGTTTATAGCTCTGGTATCCTCCTTCTCGAGCTAGCTAGTGGAAGAAAACCAAGTGTAGAGTTTAGTTCTACGTTGAAGATAAAGATGGTTGATTGGGTATTGCCATTGGTTTGTGAGAAGTAA 375 0.384 MNISIGCADGIVYLHHQATPHIVHMDIKPSSVLLNLDFQALISGFRFATIVTNGETQVTRDVVKGNICYLAPGFMSGKVNESCDVYSSGILLLELASGRKPSVEFSSTLKIKMVDWVLPLVCEK 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05590 124 SUPERFAMILY Protein kinase-like (PK-like) 2 117 IPR011009 -
Vifa2g05590 124 Pfam Protein kinase domain 7 103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g05590 124 ProSiteProfiles Protein kinase domain profile. 1 124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g05590 124 Gene3D Transferase(Phosphotransferase) domain 1 1 124 - -
Vifa2g05590 124 PANTHER OS01G0253100 PROTEIN 1 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05590 Vifa-Chr2 1659682448 1659682936 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05590 1 123 Receptor kinase-like Gene Family AT2G35620 40.323 2.81e-24 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Vifa2g05590 Pkinase 1.6e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05590 - - gmx:100791193 155.221