Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05568 ATGCAGATCTTCGTGAAAACCCTAATGGGGAAGACGATAACCCTCGAGGTTGAGAAGCAGTTGGAAGACGGCCACACTCTCGCCGACTACAACATCCAGAAGGAGTCAACTCTCCATCTCGTCCTCCGTCTCCGCGGTGGCGCGAAGAAGCGTAAGAAGAAGACCTATACCAAGCCGAAGAAGATCAAGCATAAGCACAGGAAGGTGAAGCTTGCGGTTCTGCAGTTTTACAAGGTGGATGATTCCGGAAAGGTGCAGAGGCTGAGGAAGGAGTGTCCTAATGCTGAGTGTGGTGCCGGGACTTTCATGGCGAATCATTTTGATCGTCATTATTGTGGTAAGTGCGGGCTTACCTATGTTTACCAGAAGGCTGAAGCATGA 381 0.5039 MQIFVKTLMGKTITLEVEKQLEDGHTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAEA 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05568 126 Pfam Ubiquitin family 19 45 IPR000626 GO:0005515
Vifa2g05568 126 SUPERFAMILY Ubiquitin-like 1 64 IPR029071 -
Vifa2g05568 126 PANTHER UBIQUITIN 19 60 - -
Vifa2g05568 126 SUPERFAMILY Zn-binding ribosomal proteins 71 124 IPR011332 GO:0006412
Vifa2g05568 126 Gene3D - 52 126 IPR038582 -
Vifa2g05568 126 ProSiteProfiles Ubiquitin domain profile. 19 47 IPR000626 GO:0005515
Vifa2g05568 126 SMART Ribosomal_S27_2 73 118 IPR002906 GO:0003735|GO:0005840|GO:0006412
Vifa2g05568 126 Gene3D - 18 51 - -
Vifa2g05568 126 Pfam Ribosomal protein S27a 73 118 IPR002906 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05568 Vifa-Chr2 1654681690 1654682157 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05568 1 125 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 71.429 3.61e-61 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05568 K02977 - gmx:100527854 207.223