Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05565 ATGGCACAAATTCATCTTCATGGCACTCTTCATGCTACCATCTATGAGGTTGATAAGCTTAAGGCTGGTCCCGGTGGAAATTTTTTGAGCATGATCAGGCAAAACATTGAGGAGACTGTTGGTATTGGAAAGGGAGTTACTCAACTCTATGCTACTATTGATTTGGAGAAGGCGAGAGTGGGAAGGACTAGAATTATCGAAAACGAACATACTAATCCTAAATGGTATGAGTCCTTTCACATTTACTGTGCTCATTTGGCTTCCAATATCATATTCACCGTGAAAGATGATAATCCTATTGGAGCGACCTTAATTGGAAGAGCATATGTGCCTGTCGAGGAGGTATTGGATGGCGAGGAAATAGATAGGTGGCTGGAAATTTTGGATAAGGAAAAAAATCCGATACCTGAGGGTTCGAAGATTCATGTGAAGCTGCAATATTTTGATGTCACGAAAGACCGTAGCTGGGCTCGAGGCATTCATAGTACTAAATTTCCTGGAGTTCCTTATACTTTCTTCTCGCAGAGGCAAGGATGTAAGGTATCTCTTTACCAAGATGCTCATGTGCCGGATAATTTCGTCCCTAAAATATCACTTTCGGGTGGTAAAAAATATGAGCCTCATAGGTGTTGGGAGGATATCTTTGATGCAATCACTAATGCGAAACACTTGATATATATTACTGGTTGGTCTGTTTATACTGAAATTTCGTTGGTGAGGGATTCTAGGAGACCAAAGGCTGGGGGAGACGTAACGCTCGGTGAGCTTCTCAAGAAAAAAGCGAGTGAAGGTGTTAGGGTTTTGATGCTTGTTTGGGATGATAGAACGTCGGTTAATTTGTTAAAAAAGGATGGATTGATGGCTACTCATGATGAAGAAACCGCACAGTTCTTCGAAGGCACTGATGTTAATTGTGTCCTATGCCCCCGCAATCCTGATGATGGTGGTAGCATTGTTCAAGATTTACAAATTTCCACCATGTTTACTCATCATCAGAAGATTGTGGTGGTTGACAGTGAATTACCTGGTTCAGGGTCGGATAAGCGAAGAATTGTTAGTTTTGTTGGGGGTATTGACCTTTGTGATGGAAGATATGATACTGCATTCCACTCGCTTTTCAGAACCCTTGACACGGCTCACCATGATGATTTTCATCAACCTAACTTCCCCGGTGCTGCGATCACGAAAGGCGGTCCAAGGGAACCTTGGCATGACATTCACTCTCGGCTTGAAGGACCGATCGCTTGGGATGTTTTGTTTAACTTTGAGCAGCGTTGGAGGAAGCAAGGTGGGAAGGATTTACTGGTTTCTCTGAGAGAGCTTGAAGATTCTATTATCCCTCCATCCCCGGTAACGTTTCCCGATGATCAAGAGACATGGAATGTTCAGTTGTTTAGATCTATTGATGGTGGAGCAGCTTTCGGGTTCCCAGAGACTCCTGAAGATGCTGCAAGAGCCGGGCTTGTTAGTGGTAAGGACAATATCATCGATCGCAGCATTCAAGATGCTTATATTAATGCTATTCGACGCGCAAAGAACTTCATCTATATTGAAAATCAGTATTTCCTTGGAAGCTCTTTTGCTTGGAGTGGTGAGGATATTAAGCCTGAAGACATCGGTGCTCTGCATGTAATCCCAAAGGAACTGTCACTTAAGATTATGAGTAAGATTGAAGCCGAGGAAAAGTTTACAGTGTACGTTGTTGTCCCAATGTGGCCAGAAGGTGTTCCAGAAAGTGCGTCGGTTCAAGCAATATTGGATTGGCAGAGGAGAACAATGGAGATGATGTACAAGGATATCGTTCAAGCACTTAGGGCCAAGGGAATTGAGGAAGATCCTCGGAAATATTTGACGTTCTTCTGCCTTGGTAATCGGGAAGTGAAGAAACAAGGAGAATACCAGCCTTCTGAACAACCAGAACCTGATTCAGATTATGAGAGAGCCCAACAGGCCCGCCGTTTCATGATCTATGTTCATACCAAGATGATGATAGTTGATGACGAATACATAATCGTTGGATCGGCCAACATCAACCAAAGATCAATGGACGGTGCGAGGGACTCTGAGATAGCAATGGGAGCGTATCAGCCCCACCATTTGGCTACAAGACAGCCGGCACGTGGTCAGGTCCACGGTTTCCGTATGTCATTATGGTACGAGCACCTCGGCATGCTGCATGAGTCATTCCTCCATCCAGAAAGTGAAGAATGTATCACTAAGGTGAACCAGATTGCTGACAAATATTGGGATCTTTATTCCAACGATTCGCTCGAGCACGACCTTCCTGGCCACTTGCTTCGCTATCCGATTGGAGTTTCAAGTGAAGGAGATGTCACAGAGCTGCCAGGATGTGAATTCTTCCCCGACACCAAGGCTCGGATTCTCGGAGGCAAAGCTGATTACCTCCCTCCTATCCTCACAACTTAG 2427 0.4442 MAQIHLHGTLHATIYEVDKLKAGPGGNFLSMIRQNIEETVGIGKGVTQLYATIDLEKARVGRTRIIENEHTNPKWYESFHIYCAHLASNIIFTVKDDNPIGATLIGRAYVPVEEVLDGEEIDRWLEILDKEKNPIPEGSKIHVKLQYFDVTKDRSWARGIHSTKFPGVPYTFFSQRQGCKVSLYQDAHVPDNFVPKISLSGGKKYEPHRCWEDIFDAITNAKHLIYITGWSVYTEISLVRDSRRPKAGGDVTLGELLKKKASEGVRVLMLVWDDRTSVNLLKKDGLMATHDEETAQFFEGTDVNCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSELPGSGSDKRRIVSFVGGIDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFPGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDLLVSLRELEDSIIPPSPVTFPDDQETWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFAWSGEDIKPEDIGALHVIPKELSLKIMSKIEAEEKFTVYVVVPMWPEGVPESASVQAILDWQRRTMEMMYKDIVQALRAKGIEEDPRKYLTFFCLGNREVKKQGEYQPSEQPEPDSDYERAQQARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPHHLATRQPARGQVHGFRMSLWYEHLGMLHESFLHPESEECITKVNQIADKYWDLYSNDSLEHDLPGHLLRYPIGVSSEGDVTELPGCEFFPDTKARILGGKADYLPPILTT 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05565 808 Gene3D Endonuclease Chain A 476 703 - -
Vifa2g05565 808 Pfam C2 domain 9 127 IPR000008 -
Vifa2g05565 808 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 150 IPR035892 -
Vifa2g05565 808 CDD PLDc_pPLDalpha_2 492 701 - -
Vifa2g05565 808 FunFam Phospholipase D delta 201 445 - -
Vifa2g05565 808 Gene3D Endonuclease Chain A 199 444 - -
Vifa2g05565 808 FunFam Phospholipase D 467 700 - -
Vifa2g05565 808 SUPERFAMILY Phospholipase D/nuclease 151 441 - -
Vifa2g05565 808 Gene3D C2 domain 6 158 IPR035892 -
Vifa2g05565 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 654 681 IPR001736 GO:0003824
Vifa2g05565 808 SMART C2_3c 9 124 IPR000008 -
Vifa2g05565 808 PANTHER PHOSPHOLIPASE D 5 796 IPR015679 -
Vifa2g05565 808 SUPERFAMILY Phospholipase D/nuclease 451 738 - -
Vifa2g05565 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 326 364 IPR001736 GO:0003824
Vifa2g05565 808 Pfam Phospholipase D C terminal 727 797 IPR024632 -
Vifa2g05565 808 SMART pld_4 654 681 IPR001736 GO:0003824
Vifa2g05565 808 SMART pld_4 326 364 IPR001736 GO:0003824
Vifa2g05565 808 ProSiteProfiles C2 domain profile. 1 125 IPR000008 -
Vifa2g05565 808 PIRSF PLD_plant 1 808 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vifa2g05565 808 Pfam Phospholipase D Active site motif 326 364 IPR001736 GO:0003824
Vifa2g05565 808 Pfam Phospholipase D Active site motif 655 681 IPR001736 GO:0003824
Vifa2g05565 808 CDD C2_plant_PLD 2 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05565 Vifa-Chr2 1653451458 1653455394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05565 1 808 Phospholipase D Gene Family (Wang group) AT1G52570 81.975 0.0 1411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05565 K01115 - gmx:100786410 1542.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05565 2 1653451458 1653455394 Vifa2g04017 2 1178639795 1178642988 ECH
Vifa2g04017 2 1178639795 1178642988 Vifa2g05565 2 1653451458 1653455394 ECH
Vifa2g05565 2 1653451458 1653455394 Vifa2g05565 2 1653451458 1653455394 ECH
Vifa2g04017 2 1178639795 1178642988 Vifa2g05565 2 1653451458 1653455394 PCT