Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05560 ATGGTGAAATCGAAGAAATTTAGAGGTGTTAGGCAACGGCATTGGGGCTCTTGGGTTTCGGAGATTCGTCATCCTTTATTGAAAAGGAGAGTATGGCTAGGAACATTTGAAACAGCTGAAGAAGCAGCAAGAGCATATGATGAAGCAGCAATTTTAATGAGTGGAAGAAATGCAAAAACAAATTTTCCAGTTTCTGATAACAATCCAATACCAAATAACAATAATAATAACCAAAAATTATTTGCATCTTCTTCTTCTTCTTCAAATTGCACTACTACTAATACATCACTATCTGCAATTCTAAGTGCAAAGCTTAGAAAATGTTGCAAATCACCTTCACCTTCACTTACTTGTCTAAGGCTTGACACTGAAAATTCACACTTTGGAGTGTGGCAAAAAAGAGCCGGCCCTCGTTCCGATTCGAGTTGGATCATGATGGTTGAATTGGAAAGGAAGAAGAAAGAACAAGAGGAAGGAGAAATAGTACCTAATTCTAATACGGATACATTGTCTCTTGTTGATGTTAATGATAATTCTGAAAATGTCGTGAAACCTGAAGAGGAAGAGGAAGAAGAAGATCAAAAAGAAAGAAATGATAATAACAATGGATTAGATGAAGAACAAAGAATTGCACTTCAAATGATTGAAGAACTTCTAAATCATTGA 666 0.3559 MVKSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPVSDNNPIPNNNNNNQKLFASSSSSSNCTTTNTSLSAILSAKLRKCCKSPSPSLTCLRLDTENSHFGVWQKRAGPRSDSSWIMMVELERKKKEQEEGEIVPNSNTDTLSLVDVNDNSENVVKPEEEEEEEDQKERNDNNNGLDEEQRIALQMIEELLNH 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05560 221 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Vifa2g05560 221 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Vifa2g05560 221 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Vifa2g05560 221 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 180 - -
Vifa2g05560 221 MobiDBLite consensus disorder prediction 162 178 - -
Vifa2g05560 221 MobiDBLite consensus disorder prediction 153 209 - -
Vifa2g05560 221 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Vifa2g05560 221 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Vifa2g05560 221 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Vifa2g05560 221 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Vifa2g05560 221 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Vifa2g05560 221 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Vifa2g05560 221 MobiDBLite consensus disorder prediction 64 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05560 Vifa-Chr2 1652214878 1652216121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05560 1 220 AP2-EREBP Transcription Factor Family AT1G15360 59.545 6.61e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa2g05560 AP2 1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05560 - - gmx:100785898 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05560 2 1652214878 1652216121 Vifa2g05560 2 1652214878 1652216121 ECH