Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05523 ATGGAGAGCTTAAAAGCACCTTTTAAAGGAATTGTGAATGATATAAGAGGAAGATCACAGTATTATAAAGATGATTGGACTTGTGCTTTCCGTTCCGGTATTGAGATATTGGCTCCAACTACCTATATTTTCTTTGCTTCTGCTTTACCTGTTATTGCCTTTGGTGAACAGCTGAGTAGAGACACGGATGGAAGATTGAGCACAGTAGAAACACTAGCTTCTACAGCAATTTGTGGAATCATGCACTCAGTTATTGGAGGTCAGCCACTACTTATTGTAGGAGTTGCTGAACCAACCATCATCATGTATACCTATTTGTATAACTTTGCCAAGAATAAAGATGGCTTGGGACAAGAACTCTTTTTGGCTTGGGCTGGATGGGTTTGTGTATGGACTTCTCTCTTGCTTTTTCTCCTAGCAATATTCAATGCTGGCGATATCATCAACAGATTTACAAGGGTTGCAGAAGAGCTCTTTGGCATGTTGATTTCAGTCTTGTTCATTCAAGAGGCCATTAAGGGAATAATAAAGGAGTTTAGTGTTCCTAAAAATGAAAACTCAAAATTAGAGCACTACCAATTTCATTGGCTTTATGTGAATGGCTTATTAGGTGTTATATTCACATTTGGCCTTCTCTATACAGCATTGAAGAGTAGAAGAGCAAGATCATGGTTATACGGGACAGGGTGGTTGAGAAGCTTTATTGCAGACTATGGTGTCCCTTTCTTGGTGGTAGTATGGACAATTGTGTCATTCTCAGGGCCAAAAGAAATACCTTCTGAAATTCCTAGAAGACTAGTTGCTCCTCTTGCTTGGGAATCTACATCTTTACACCATTGGACTGTTATCAAAGACATGGGGAAGGTTTCTCCAACATATATCTTTGCTGCTTTTATTCCTGCCTTGATGGTAGCAGGACTTTACTTCTTTGATCATAGTGTTGCTTCTGGGATGGCACAGCAGAAAGATTTCAATCTCAAAAAACCTTCTGCATATCATTACGACATATTCTTACTCGGATTCATGACTTTGCTTTGTGGAATACTTGGATTACCACCTTCGAACGGTGTCCTTCCTCAATCACCTATGCACACCAAGAGCCTTGCAGTTCTAAAGGGTCTGATGATTAGAAGAAAGATGGTTGAAAGTGCGAAAGAAAGCATAAGAAAGAAAGCTAGCAACACTGAAATCTACGGGAAGATGCAAGCAGTGTTTGTAGAAATGGACAGCAGCAGCCATGTTACTTCTGTGGAAAGAGAGTTAGAGAACTTAAAAGAGGTAGTCCTAAAAGGCGAAGATAAAGGAGACAACAAGAAGGATACATTTGACCCTGAGAAGCATATTGATGCGTGTTTGCCTGTTAGAGTAAATGAGCAAAGAATCAGCAATCTCTTACAATCACTCTTTGTTGGAGCATCAGTTTTTGCTATGCCTGTCATAAAAAATATCCCAACTTCGGTTTTGTGGGGATACTTTGCATACATGGCCATTGATAGTCTTCCTGGTAACCAATTCTGGGAAAGGATACTACTTCTCTTCGTAACGCCTAGTAGATGGTTCAAGTTATTGGAGGGTGATCATGCTTCCTTCGTGGAATCGGTACCAATTAGAAACATAGTCTTGTTCACAATCTTTCAATGTGTGTATTTCTTGGTTTGTTTTGGAGTAACATGGATTCCAATAGCTGGGATATTGTTCCCTTTGCCTTTCTTTTTACTGATCTTGGTGAGGCAATATATTCTCCCTAAGTTGTTTAGTCTTCATCACCTAAGAGAACTAGATGCAGCTGAATATGAAGAAATTGCCGGTGCTCCGAGACTCTCGATGGATTCACCTAGTTTTGCATCAAGGGAATTATCTGATAGTGAAATATTAGATGAATTGACTACTAGCAGAGGAGAGTTGAAGGTCAGAACTCTAAGTTTTAGAGAGGAAAGACACGGTCAAGTGATCTATCCTAATGAAATAGTATATGAAAATGAATCATCAAGTAGTTAA 1998 0.3939 MESLKAPFKGIVNDIRGRSQYYKDDWTCAFRSGIEILAPTTYIFFASALPVIAFGEQLSRDTDGRLSTVETLASTAICGIMHSVIGGQPLLIVGVAEPTIIMYTYLYNFAKNKDGLGQELFLAWAGWVCVWTSLLLFLLAIFNAGDIINRFTRVAEELFGMLISVLFIQEAIKGIIKEFSVPKNENSKLEHYQFHWLYVNGLLGVIFTFGLLYTALKSRRARSWLYGTGWLRSFIADYGVPFLVVVWTIVSFSGPKEIPSEIPRRLVAPLAWESTSLHHWTVIKDMGKVSPTYIFAAFIPALMVAGLYFFDHSVASGMAQQKDFNLKKPSAYHYDIFLLGFMTLLCGILGLPPSNGVLPQSPMHTKSLAVLKGLMIRRKMVESAKESIRKKASNTEIYGKMQAVFVEMDSSSHVTSVERELENLKEVVLKGEDKGDNKKDTFDPEKHIDACLPVRVNEQRISNLLQSLFVGASVFAMPVIKNIPTSVLWGYFAYMAIDSLPGNQFWERILLLFVTPSRWFKLLEGDHASFVESVPIRNIVLFTIFQCVYFLVCFGVTWIPIAGILFPLPFFLLILVRQYILPKLFSLHHLRELDAAEYEEIAGAPRLSMDSPSFASRELSDSEILDELTTSRGELKVRTLSFREERHGQVIYPNEIVYENESSSS 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05523 665 Pfam HCO3- transporter family 7 181 IPR011531 GO:0006820|GO:0016020
Vifa2g05523 665 Pfam HCO3- transporter family 454 544 IPR011531 GO:0006820|GO:0016020
Vifa2g05523 665 Pfam HCO3- transporter family 201 371 IPR011531 GO:0006820|GO:0016020
Vifa2g05523 665 Gene3D Helical hairpin bin 18 60 - -
Vifa2g05523 665 PANTHER ANION EXCHANGE PROTEIN 5 602 IPR003020 GO:0005452|GO:0006820|GO:0016020
Vifa2g05523 665 Coils Coil 414 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05523 Vifa-Chr2 1641931432 1641939460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05523 1 657 Antiporters AT1G74810 68.413 0.0 942
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05523 K24194 - gmx:100811184 1061.98