Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05496 ATGAGCAACTCATTTAAAACTTTCAACAAACACTTTCCTCTTCTTCCATTTCATCATCATCATCATAAATTCCTCTCACCTTCCTCTGTTTATTACTCTTGCACAACCACCATCTCTTGCTCTCTATTTTGTTCTTCATCACATTCCTCCTCATCTCAATCTACTACATTTATGGACATCTTCAAAGCAATTTCTAAACAAGAAGTTGCAGCTCATGGTAGTGTTGCTATCAGAGCTGATCAGAAGAGTTATAGTTACAATCAGCTCATTTCATCGGCACAAAAAATATCTAATCTCTTGTGTGAAAATGAAGTGAAGGGAAATCTTGGAGGAGCTCGAATAGGAATTGTAGCCAAACCGTCTGCCGAATTCGTTGCCGGAATACTTGCAACTTGGTTTAGCGGAGGTGTTGCTGTTCCACTTGCACTCAGCTATCCAGAAGTAGAGCTCCTGTATGTAATGAATAATTCGGATGTGTCTGCAATACTGAGTACTGAAGATCATAGCGAGTTAATGCAAAGCATTGCCAACAAAACATCTTCTCGGTTTTTTCATATTCCTCCCGTTTCCATAAAGTCCTCCGAGAAGAGCAATGGACATTCAAAAAATGAAGAAAGTGATGCAGACAGAATTTTCCTGGAAAACATTGAAAGCTCAAGTGAAGATCCAGCACTGATTTTGTACACTAGCGGGACAACAGGTAAACCCAAGGGAGTTGTTCATACACACAGAAGCATCCTTGCTCAGGTCCAAGCCTTGACAAAAGCATGGGAGTACACATCAGCTGATCGGTTTTTGCATTGTCTACCACTACATCATATCCACGAAACCTTTTTTATTTTACTGGCCCCTCTCTATGTCGGTTCCACGGTTGAGTTTCTTCCAAAATTTAGTGTCAGTGGAATTTGGAAGAGATGGCGTGACTCATATCCAACTGAAGGATATGAGGCTGATGATGCTATAACTGTATTCACCGGAGTTCCAACTATGTACACTCGATTAATACAAGGTTATCATGCCATGGATCCAGAGCTGCAAGCCACTTCTGCATCTAGCGCAAGGAACTTGCGTCTAATGATGTGTGGATCCTCTGCACTTCCTCAACCTGTTATGCAAGAATGGGAATCCATCACCGGACATCGCTTATTGGAGCGATATGGCATGACTGAATTTGTCATGGCACTATCAAATCCTTTGAAAGGTGAGCGCAAAGCAGGCACCGTTGGCAAACCATTACCTGGTGTGCAGGTCAAGATTCTAACAGATGAGGAGCATGAGAGTGAGGAATCTGGGGTTGGTGAGCTTTGCGTCAAAAGCCCTTCGGTGTTCAAAGAATATTATAAACTTCCTGAGGTAACAAAGGAATCATTTACAGATGATGGGTTTTTTAAGACCGGAGACGCAGTCACTACAGACGAAGATGGATATTTCATCATTTTAGGACGTAAGAACGCGGATATAATCAAGAACGGTGGCTATAAACTGTCTGCATTAGAAATTGAATCAGTAATAGTAGAGCATCCAACTGTCTTGGAATGTTGTGTTTTGGGAGTACCGGACAAAGACTACGGAGAAATTGTTTGTGCAATTATCGTGCTTGCCGCAAAGAGCAAAGAGTCAAAGCCTGCTCTAAGCCTAGCAGAGTTATCCACTTGGGCCAAAACTAAACTTGCACCTTACAAGATACCGACTCGACTTATCGTGTGGGAGTCACTCCCTCGCAATGCAATGGGGAAGGTAAATAAAAAAGAGCTGAAGAAGCTGGATAAGAAGTCGGAAAAGACGACTGGACGTGTTAGAGAAAGGAATTACCTTTGCTATCTTGAAGAACCAGGTCACGGATGTTACCTTTCATGA 1857 0.4222 MSNSFKTFNKHFPLLPFHHHHHKFLSPSSVYYSCTTTISCSLFCSSSHSSSSQSTTFMDIFKAISKQEVAAHGSVAIRADQKSYSYNQLISSAQKISNLLCENEVKGNLGGARIGIVAKPSAEFVAGILATWFSGGVAVPLALSYPEVELLYVMNNSDVSAILSTEDHSELMQSIANKTSSRFFHIPPVSIKSSEKSNGHSKNEESDADRIFLENIESSSEDPALILYTSGTTGKPKGVVHTHRSILAQVQALTKAWEYTSADRFLHCLPLHHIHETFFILLAPLYVGSTVEFLPKFSVSGIWKRWRDSYPTEGYEADDAITVFTGVPTMYTRLIQGYHAMDPELQATSASSARNLRLMMCGSSALPQPVMQEWESITGHRLLERYGMTEFVMALSNPLKGERKAGTVGKPLPGVQVKILTDEEHESEESGVGELCVKSPSVFKEYYKLPEVTKESFTDDGFFKTGDAVTTDEDGYFIILGRKNADIIKNGGYKLSALEIESVIVEHPTVLECCVLGVPDKDYGEIVCAIIVLAAKSKESKPALSLAELSTWAKTKLAPYKIPTRLIVWESLPRNAMGKVNKKELKKLDKKSEKTTGRVRERNYLCYLEEPGHGCYLS 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05496 618 FunFam Acyl-CoA synthetase family member 3 66 482 - -
Vifa2g05496 618 SUPERFAMILY Acetyl-CoA synthetase-like 35 591 - -
Vifa2g05496 618 Pfam AMP-binding enzyme C-terminal domain 499 579 IPR025110 -
Vifa2g05496 618 Gene3D - 61 482 IPR042099 -
Vifa2g05496 618 ProSitePatterns Putative AMP-binding domain signature. 226 237 IPR020845 -
Vifa2g05496 618 Pfam AMP-binding enzyme 72 488 IPR000873 -
Vifa2g05496 618 Gene3D - 485 598 IPR045851 -
Vifa2g05496 618 PANTHER ACYL-COA SYNTHETASE 52 586 - -
Vifa2g05496 618 CDD MCS 74 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05496 Vifa-Chr2 1637118755 1637126948 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05496 221 588 Monolignol Biosynthesis Gene Families AT4G19010 27.895 8.45e-43 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05496 K18660 - gmx:100810130 834.328