Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05493 ATGGCCGGTGGTGGTGGTGGTGGTGGTGGTGGTAGTTCATTGACAGGTTTGCAAGAACATGTGAAGTTGGCAAGAGATTATGCTCTTGAAGGTCTCTATGATACTTCTATCATCTTCTTTGATGGTGCTGTTGCACAAATCAACAGGCATCTAAACAGTGTTGACGACCCTTTGATTCGTGCAAAATGGATGAATGTTAAGAAAGCTCTTTGTGAGGAAACTGAAGTTGTAAAGCAACTTGATGCAGATAAAAGGGCGTTTAAAGATAATCCTATTGGAAGACGTCCTCCGTCGCCTCCGATTTCTACTAAATCTTCCTTTGTTTTTCAGCCGTTAGATGAGTATCCTACTTCATCGAATTCATCTTTCGATGATCCGGATGTGTGGAGGCCACCTAGTAGGGATACTGGAAGTAGAAGACCTGGAAGGGGTGGTCAAGTGAGTAATCGGAAATCTCAACAAGATAGTAAATGGGCTCGAGGTGCTACTACAAAGACAGTTACCACTGGCCGTGGTGGTGCAAAGGCTGGTGGTGCTACTAGCAAAGTTAACTCAGGGGGCCGGACATCAACTCCCGTAAAGAAAGGTGGTGCATCGGGAAAGTCTAGCAAGACAGATGCAGTTAATGGTGATGCTGAAGAAGGGAAGTCGAATAAAGGACAATATGAAGGTCCTGACCCTGAATTGGCTGAAATGCTAGAAAGGGATGTGTTAGAAACCTCTCCTGGAGTTAGATGGGATGATGTTGCTGGTCTCACTGAAGCAAAAAGGCTTTTAGAAGAAGCTGTTGTGCTTCCCTTATGGATGCCTGAATATTTCCAGGGAATTAGGAGACCTTGGAAAGGTGTCCTTATGTTTGGTCCTCCGGGAACTGGAAAGACGCTTCTTGCTAAGGCAGTTGCTACTGAATGTGGAACCACTTTCTTTAATGTTTCTTCTGCTACTTTAGCTTCTAAATGGCGCGGAGAAAGTGAGCGAATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCTTATGCACCAAGTACAATTTTCATTGACGAAATCGATTCTCTATGTAATGCTAGGGGGGCTTCTGGAGAGCATGAATCGTCTCGAAGGGTGAAATCTGAACTTCTAGTTCAGGTTGATGGTGTAAGCAACAGTGGTACAAATGAAGATGGTAGCAAGAAAATAGTAATGGTCTTGGCAGCTACTAACTTTCCATGGGACATAGATGAAGCACTAAGGAGAAGGCTGGAAAAGAGAATATATATTCCTCTTCCAAATTTCGAGAGTCGTAAAGAGTTGATCCGGATAAATTTGAAGACCGTTGAGGTAGCCCCGGATGTCAACATAGATGATGTGGCTCGTCGAACTGATGGCTATAGTGGAGATGATTTAACAAACGTCTGTCGAGATGCTTCCTTAAATGGAATGAGACGGAAGATAGCAGGAAAGACACGCGATGAAATTAAGAGTATGTCTAAGGATGATATTTCAAAGGATCCTGTTGCCATGTGTGATTTTGAAGAAGCTTTGGCAAAGGTCCAACGAAGTGTTTCTCCGGCAGATATTGAACGCCATGAAAAGTGGTTTCACGAATTTGGATCAGCATAA 1596 0.4373 MAGGGGGGGGGSSLTGLQEHVKLARDYALEGLYDTSIIFFDGAVAQINRHLNSVDDPLIRAKWMNVKKALCEETEVVKQLDADKRAFKDNPIGRRPPSPPISTKSSFVFQPLDEYPTSSNSSFDDPDVWRPPSRDTGSRRPGRGGQVSNRKSQQDSKWARGATTKTVTTGRGGAKAGGATSKVNSGGRTSTPVKKGGASGKSSKTDAVNGDAEEGKSNKGQYEGPDPELAEMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNSGTNEDGSKKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDDVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKSMSKDDISKDPVAMCDFEEALAKVQRSVSPADIERHEKWFHEFGSA 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05493 531 MobiDBLite consensus disorder prediction 111 126 - -
Vifa2g05493 531 FunFam Katanin p60 ATPase-containing subunit A1 421 507 - -
Vifa2g05493 531 PANTHER AAA DOMAIN-CONTAINING 33 530 - -
Vifa2g05493 531 Pfam ATPase family associated with various cellular activities (AAA) 283 420 IPR003959 GO:0005524|GO:0016887
Vifa2g05493 531 SMART AAA_5 279 422 IPR003593 GO:0016887
Vifa2g05493 531 MobiDBLite consensus disorder prediction 182 206 - -
Vifa2g05493 531 FunFam Katanin p60 ATPase-containing subunit A1 241 409 - -
Vifa2g05493 531 Gene3D - 12 88 - -
Vifa2g05493 531 Gene3D - 241 521 IPR027417 -
Vifa2g05493 531 ProSitePatterns AAA-protein family signature. 392 411 IPR003960 GO:0005524|GO:0016887
Vifa2g05493 531 MobiDBLite consensus disorder prediction 87 106 - -
Vifa2g05493 531 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 15 531 IPR028596 GO:0008017|GO:0008568|GO:0051013
Vifa2g05493 531 MobiDBLite consensus disorder prediction 111 226 - -
Vifa2g05493 531 Gene3D - 421 507 - -
Vifa2g05493 531 Pfam Vps4 C terminal oligomerisation domain 484 529 IPR015415 -
Vifa2g05493 531 MobiDBLite consensus disorder prediction 142 170 - -
Vifa2g05493 531 CDD Kp60-NTD 17 82 - -
Vifa2g05493 531 Pfam AAA+ lid domain 442 483 IPR041569 -
Vifa2g05493 531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 516 IPR027417 -
Vifa2g05493 531 MobiDBLite consensus disorder prediction 207 221 - -
Vifa2g05493 531 FunFam Katanin p60 ATPase-containing subunit A1 12 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05493 Vifa-Chr2 1636470734 1636473568 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05493 235 523 Calmodulin-binding Proteins AT3G56690 39.262 2.23e-49 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05493 K07767 - zju:112489859 895.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05493 2 1636470734 1636473568 Vifa2g05493 2 1636470734 1636473568 PCT