Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa2g05491 | ATGAATGAGAAGAAGAGGAAATTCTCGGAGATAGACGGTGGCGGGAAAGAAAATGGAGGCTCCGGTGATCGGAAAAGTGTTGACAAGAAGAATCAAGTTGTCGGGTGGCCTCCGGTGTGTTCGTACCGGAAGAAGAACATGAATGAAGCTTTGGCTTTGGAGAAGCTCTTTGATTGTTGTGGAATTGAAGAGTCATTAAAAGATGCAGAGAGTTGTGAACACGTTCCAATTTATGAAGACAAAGATGGTGATTGGATGCTGGTTGGAGATGTCCCTTGGGAGATGTTTATTGAGTCATGCAAGAGGCTGAGGATTATGAAGAGGTCAGATGCAAAGGGCTTTGATTTGCAACCAAAAGGATGTTTAAAGAGATTCATATAG | 381 | 0.4304 | MNEKKRKFSEIDGGGKENGGSGDRKSVDKKNQVVGWPPVCSYRKKNMNEALALEKLFDCCGIEESLKDAESCEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFDLQPKGCLKRFI | 126 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa2g05491 | 126 | Pfam | AUX/IAA family | 70 | 114 | IPR033389 | - | |
Vifa2g05491 | 126 | Pfam | AUX/IAA family | 23 | 49 | IPR033389 | - | |
Vifa2g05491 | 126 | PANTHER | AUXIN-RESPONSIVE PROTEIN IAA17 | 51 | 112 | IPR003311 | GO:0005634|GO:0006355 | |
Vifa2g05491 | 126 | SUPERFAMILY | CAD & PB1 domains | 52 | 107 | - | - | |
Vifa2g05491 | 126 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Vifa2g05491 | 126 | Gene3D | - | 41 | 119 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa2g05491 | Vifa-Chr2 | 1635742274 | 1635744674 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa2g05491 | 53 | 116 | B3 DNA Binding Superfamily | AT5G20730 | 31.250 | 1.25e-06 | 44.3 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | AUX/IAA | Vifa2g05491 | AUX_IAA | 4e-25 | CL0072 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa2g05491 | K14484 | - | gmx:547784 | 180.259 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa2g05491 | 2 | 1635742274 | 1635744674 | Vifa2g05491 | 2 | 1635742274 | 1635744674 | ECH | |
Vifa2g05491 | 2 | 1635742274 | 1635744674 | Vifa2g05491 | 2 | 1635742274 | 1635744674 | PCT |