Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05491 ATGAATGAGAAGAAGAGGAAATTCTCGGAGATAGACGGTGGCGGGAAAGAAAATGGAGGCTCCGGTGATCGGAAAAGTGTTGACAAGAAGAATCAAGTTGTCGGGTGGCCTCCGGTGTGTTCGTACCGGAAGAAGAACATGAATGAAGCTTTGGCTTTGGAGAAGCTCTTTGATTGTTGTGGAATTGAAGAGTCATTAAAAGATGCAGAGAGTTGTGAACACGTTCCAATTTATGAAGACAAAGATGGTGATTGGATGCTGGTTGGAGATGTCCCTTGGGAGATGTTTATTGAGTCATGCAAGAGGCTGAGGATTATGAAGAGGTCAGATGCAAAGGGCTTTGATTTGCAACCAAAAGGATGTTTAAAGAGATTCATATAG 381 0.4304 MNEKKRKFSEIDGGGKENGGSGDRKSVDKKNQVVGWPPVCSYRKKNMNEALALEKLFDCCGIEESLKDAESCEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFDLQPKGCLKRFI 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05491 126 Pfam AUX/IAA family 70 114 IPR033389 -
Vifa2g05491 126 Pfam AUX/IAA family 23 49 IPR033389 -
Vifa2g05491 126 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 51 112 IPR003311 GO:0005634|GO:0006355
Vifa2g05491 126 SUPERFAMILY CAD & PB1 domains 52 107 - -
Vifa2g05491 126 MobiDBLite consensus disorder prediction 1 30 - -
Vifa2g05491 126 Gene3D - 41 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05491 Vifa-Chr2 1635742274 1635744674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05491 53 116 B3 DNA Binding Superfamily AT5G20730 31.250 1.25e-06 44.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vifa2g05491 AUX_IAA 4e-25 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05491 K14484 - gmx:547784 180.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05491 2 1635742274 1635744674 Vifa2g05491 2 1635742274 1635744674 ECH
Vifa2g05491 2 1635742274 1635744674 Vifa2g05491 2 1635742274 1635744674 PCT