Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05478 ATGGTTGGAAATTCCAATAGAGTTGATACCTTTGAAACCATTAAAATTCAACCAGAGATACCAATGTTCCAATCACCATTTGAAATCCATAAGGTGAGATTGCCACCACAAAGAACCACTCTTCAAAAACTTAGACTTAGACTCTCTGAAATCTTTTTTCCTGATGACCCTTTTCATGGTTTCAAAAACCAAACTTGGATCATCAAGTTTCTTCTTGCTCTTCAATATTTGTTCCCTATTTTTCAATGGGGTCCTCAGTATAATCTTAAACTTCTTCGCTCCGATATCGTCTCCGGTCTCACCATCGCTAGTCTTGCCATTCCTCAGGGAATCAGTTATGCCAAGCTTGCAAACTTGCCACCTATTATTGGATTATATTCAAGTTTTGTGCCTGCTTTGATATATTCAATACTTGGAAGTTCTAAACATCTTGCTGTTGGTCCAGTTTCAATAGCATCATTAGTTATGGGATCAATGTTAAGTGAAAGTGTTTCCTATAATCAAGATCCAATTCTCTATCTTAAATTGGCTTTCACTTCAACTCTTTTTGCTGGTTTATTTCAAGCTTCTCTTGGTGTATTAAGGCTAGGATTTGTAATTGATTTTCTATCAAAGGCAACATTGGTTGGTTTCATGGCTGGTGCTGCAATAATTGTGTCACTTCAACAACTCAAAGGATTGCTAGGAATTCTTCACTTCACCAATAAGATGCAAATTGTTCCTGTATTAGCCTCTGTTTTCAAGCAAAGAGATGAGTGGTCATGGCAAACAATTTTGCTAGGAATTAGTTTCCTAGCCTTCTTGCTAACAACAAGACACATTAGCATGAAGAAGCCAAAATTATTCTGGATTTCAGCAGCTGCTCCATTGACTTCAGTTATTCTTTCAACAATTTTAGTCTTTTCAATGAGACATAAGATCCATAAAATAGCAATTATTGGTGAATTGCCAAAGGGAATTAATCCACCATCTTCAAATATGTTATTCTTCAATGGTCCTTATTTGGCTCTAGCTATCAAAACAGGACTTGTCAGTGGAATCTTGTCTCTCACTGAAGGAATTGCAGTTGGAAGAACATTTGCTTCACTTAGGAACTACCAAGTGGATGGAAACAAAGAAATGATGGCTATTGGTCTTATGAACATAGCTGGTCCTTGTTGTTCATGTTATGTCACAACAGGATCGTTTTCTCGATCTGCCGTTAACTACAATGCTGGAGCACAGACAGCAGTATCAAACATAATCATGGCATCAGCAGTTCTTGTGACACTTCTGTTTCTCATGCCGCTGTTCTATTACACGCCGAATGTTATCTTGGCAGCCATTATCATCACCGCTGTTATCGGTCTGATCGATTTTCAAGTAGCTTATAAATTGTGGAAGGTTGACAAGCTTGATTTCTTGGCGTGTTTGTGTTCCTTTTTCGGTGTTCTCTTCATTTCAGTTCCAATAGGCCTTGGAATCGCGGTGGCGATATCGGTATTCAAAATCCTGCTTCATGTTTCTAGGCCAAACACATTGGTTTTAGGAAACATTCCAGGCACACCAATATTCCACAACCTAAATCAATATAAAGATGCTCTAAGGATTCCTTCATTTATCATTTTGGCTGTTGAGTCTCCCATATACTTTGCCAATGCAACTTACCTGCAAGAAAGAATACTGAGATGGGTTCGAGAAGAGGAAGAATATGTAAAAGCAAACAATGGAAGTATGTTGAAATGCGTTATTTTAGACATGACAGCCGTGACAGACATAGACACAAATGGAATCGACACGTTATGTGAACTTAGAAGGAGACTGGAGCAAAAATCACTCCAGCTTGTGTTGGCGAATCCGGTGGGAAGTGTGATGGAAAAATTGCACGAGTCGAATATTTTGGAATCCTTTGGAATGAAAGGATTGTATCTCTCGGTGGGAGAAGCCGTGGCTGACATTTCATCATCATGGAAAGCTCAGCCTTGA 1965 0.3878 MVGNSNRVDTFETIKIQPEIPMFQSPFEIHKVRLPPQRTTLQKLRLRLSEIFFPDDPFHGFKNQTWIIKFLLALQYLFPIFQWGPQYNLKLLRSDIVSGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPALIYSILGSSKHLAVGPVSIASLVMGSMLSESVSYNQDPILYLKLAFTSTLFAGLFQASLGVLRLGFVIDFLSKATLVGFMAGAAIIVSLQQLKGLLGILHFTNKMQIVPVLASVFKQRDEWSWQTILLGISFLAFLLTTRHISMKKPKLFWISAAAPLTSVILSTILVFSMRHKIHKIAIIGELPKGINPPSSNMLFFNGPYLALAIKTGLVSGILSLTEGIAVGRTFASLRNYQVDGNKEMMAIGLMNIAGPCCSCYVTTGSFSRSAVNYNAGAQTAVSNIIMASAVLVTLLFLMPLFYYTPNVILAAIIITAVIGLIDFQVAYKLWKVDKLDFLACLCSFFGVLFISVPIGLGIAVAISVFKILLHVSRPNTLVLGNIPGTPIFHNLNQYKDALRIPSFIILAVESPIYFANATYLQERILRWVREEEEYVKANNGSMLKCVILDMTAVTDIDTNGIDTLCELRRRLEQKSLQLVLANPVGSVMEKLHESNILESFGMKGLYLSVGEAVADISSSWKAQP 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05478 654 ProSiteProfiles STAS domain profile. 523 646 IPR002645 -
Vifa2g05478 654 PANTHER SULFATE TRANSPORTER 48 646 IPR001902 GO:0016020|GO:0055085
Vifa2g05478 654 Pfam STAS domain 524 642 IPR002645 -
Vifa2g05478 654 SUPERFAMILY SpoIIaa-like 529 645 IPR036513 -
Vifa2g05478 654 Gene3D STAS domain 503 648 IPR036513 -
Vifa2g05478 654 ProSitePatterns SLC26A transporters signature. 121 142 IPR018045 GO:0008271|GO:0008272
Vifa2g05478 654 FunFam Sulfate transporter 31 503 649 - -
Vifa2g05478 654 Pfam Sulfate permease family 92 471 IPR011547 GO:0016020
Vifa2g05478 654 CDD STAS_SulP_like_sulfate_transporter 524 639 - -
Vifa2g05478 654 NCBIfam sulfate permease 79 642 IPR001902 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05478 Vifa-Chr2 1630117385 1630123919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05478 24 654 Inorganic Solute Cotransporters AT3G15990 75.987 0.0 1013
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05478 K17471 - gmx:100780331 1102.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05478 2 1630117385 1630123919 Vifa2g05478 2 1630117385 1630123919 ECH
Vifa5g00162 5 22016296 22019920 Vifa2g05478 2 1630117385 1630123919 PCT