Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05475 ATGCGTCCTCCAATGAAGAGAGTCAATTACAAAATTGAAGACAAAGTAGAAGTATGCAGTAGAGAAGAAGGGTTTATTGGTTCTTACTTTAAAGCTACAATTGTTTCGTGTCTTCAAAATGATAAATTTATGATTCGCTACGAGAATTTATTATTAGATGATGAGTCCGGACCTCTCATAGAAACAATTAATCGAAGAGAGCTCCGTCCACTACCACCACGTGTCCGCAATCCAGCCGAGTTCCATTTCAATCAAAAAGTAGATGTTTTTGATAATGATGGTTGGTGGTTAGGAGAAATCACTAGTGAGAAAACCCTCTCCGAAAATTATTATTATTACAATGTGTATTTTAACACTACTGATCAGACAATTTACTATCCTTGTGATCGGATTAGGGTTCATCATGAATGGATTTATGGAGACTGGATCTTAGAAAGATAA 441 0.3583 MRPPMKRVNYKIEDKVEVCSREEGFIGSYFKATIVSCLQNDKFMIRYENLLLDDESGPLIETINRRELRPLPPRVRNPAEFHFNQKVDVFDNDGWWLGEITSEKTLSENYYYYNVYFNTTDQTIYYPCDRIRVHHEWIYGDWILER 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05475 146 CDD Tudor_Agenet_AtDUF_rpt1_3 10 73 - -
Vifa2g05475 146 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 10 143 - -
Vifa2g05475 146 Pfam Agenet domain 14 73 IPR008395 -
Vifa2g05475 146 SMART agenet_At_2 8 76 IPR014002 -
Vifa2g05475 146 SMART agenet_At_2 79 139 IPR014002 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05475 Vifa-Chr2 1629637479 1629637919 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05475 20 137 PHD Transcription Factor Family AT5G58610 29.197 2.40e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05475 - - psat:127104950 196.438