Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05474 ATGCGTCCACCAATGAGAAGAGTCAATTACAATGTTAGAGATAAAGTAGAAGTATGCAGTAAAGAAGAAGGTTTTGTTGGTTCCTACTTTAAAGCCACAATTGTTTCTTGCCTTCAAAATGAGCAATATGTGGTTCGTTACACGAATCTATTGTTAGATGATGAATCTGGACCTCTCACAGAAAGAGTTCATCGAAGAGAGCTTCGTCCATTGCCGCCACGTGTTCGCAATCCACCTGAGTTTAATTTCAATCAGAAAGTAGATGTTTTTGATAATGATGGTTGGTGGTTAGGAGAAATTGCTAGTGAGAAGACTCTCTTTGAAAATTGTTATTATTATAAGGTGTGGTTCAATACTACTGGTGAGACTATTTACTATCCTCTTAATCAAATAAGAGTTCATCACGAATGGATTTATGGAGAGTGGATCGTTGAGACATAA 441 0.3696 MRPPMRRVNYNVRDKVEVCSKEEGFVGSYFKATIVSCLQNEQYVVRYTNLLLDDESGPLTERVHRRELRPLPPRVRNPPEFNFNQKVDVFDNDGWWLGEIASEKTLFENCYYYKVWFNTTGETIYYPLNQIRVHHEWIYGEWIVET 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05474 146 CDD Tudor_Agenet_AtDUF_rpt1_3 14 73 - -
Vifa2g05474 146 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 11 143 - -
Vifa2g05474 146 SMART agenet_At_2 8 76 IPR014002 -
Vifa2g05474 146 SMART agenet_At_2 79 139 IPR014002 -
Vifa2g05474 146 Gene3D - 2 75 - -
Vifa2g05474 146 Pfam Agenet domain 14 73 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05474 Vifa-Chr2 1629194430 1629194870 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05474 20 137 PHD Transcription Factor Family AT5G58610 30.769 6.72e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05474 - - psat:127104950 190.274