Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05473 ATGCGAAACCGACAAACTTTCCATTTTATGCAATGGTTGAAAGTTGAAAATGGACCACAATATGTGTGCACAGATTTCTGGACGTTTGTTTGCACTAATTGTAGCGGAATATACCGTGAACTTACACATCGTGTGAAATCAGTTTCAATGGCTAACTTTACTTCGCAAGAAGTTACTGCACTTCAAGAAGGAGGGAATCAGCGTGCAAGAAATGTTTATTTTAAAGAATGGGATGGACAACAACATTCTTTCCCTGACAGTGATAATGTTAACAGGCTCCGAGACTTTATTAAGCATGTTTATGTGGATAGGAGATTCACCGGAGATAGTACCTCTGACAAACGAGTGAAAAACGGTGGTGACAAAGATGGGTCATATGAAAACAGGAGAGTTGAGGAGGGAGGATCTAAAAGCCCTCCATATGAAGACTCACATGAACCTTGTTATAGTGATAGGTCTAGTCCCGGTGGAAGAAGTCCTGGATATGATCAAGAAAGTAGGCAAGTTGGTAACTATAAGAGAAGTCCCGGTCGTCCTCCAGTTATCAATGATTGGCATCGTGAAGAACGTAGAAAATCAGATGGAGATTATAAGACGGAAATACCTCTTAGGATAAGTGGACCTCCCAAACGGAACAATGGAAAAGCTGCCAATGCCTCAACACTGACACAGAGAACTGCATCCTCCGGTAGCTTGGTATCCAGTAATGAAAGCCAAGTAAATATTAAGCTTGAGACTACTAAGAACCTTATTGATTTTGATGCTGATCCTATTGCTTCCACAATTCCTCAAGCCCAACAAACTAGCGCGCCTCAACCTGTTTTGCAGCCAGGAAATTCCAGTGATGACAATTGGGCCTCTTTTGATATTGCTTCTGAGAAGAAAGCAAATCAAAACACCTCAAATTTAAATCCACTTGAATCCGTACTGTCCCAATTATCTTATTCGGCATCTTTATCTTCTCATGCTTCGGGAGTCCAAGGACCTATTCCAGCAGGGGCTCTTAGTTTTGGCAGTTTATCATCTTTCCCATCCAATGATGCTTCGATGCCATCTTCCGGACTGGAAGTTGTATTACCTCATAATAATGTAGGAAAGTGGGCTAGTTCGCAGCATCAGCAACCAATGTTCTCTGCTGTAAATAGTCAGCCATCGCATGTACCTTCTGTACCCACAGGACAGGGATATCCCAACTCACCAATGCCTCATGCATACCATCGTGCTTCGAAGCCAGCCAATGAGGCTTTTAACAGTATTCTTTCTCAAACTTCTGCTGTAGAAGTAAAACCAAGTGGAAGAACAGAACTTTCTGAAGATCTGTTCACTGCAAAACACTCTTCCTTCTCTGCTCCAGTTCAAGGTTGGCAGGCGGGTCTTCCCCAGGGCAGGGGCATCTCAATGCAATATAATAATAATGTGGCGCCCATACCAAGTTTTTCGGAGCCATCAAGGTCAACAAATCCATTTGATGTCGGCAGAAAACAAACCCCAGATCAAGACCCAGACAGGCAACAACCTGAAGAAGTGGAAGAAAGGCAACAACCTAAACAAGTGTCAGAGAGGTTGCAACAACCTGAAAAAGTGGCACAGAGGCAACACCTTGAACAAGTGGTAGAAAGGAAACAACCAGAAAAAGTAGCTGAGAGTCGACTACCTAGTGATAAAGTTATTCCGCCACAGCATGCAAAGACCCTTCTCATTTGTTTTGTATTCCTATATGGTAGTACCAAGGCGCGATTTCCCCTTTCCAGTCATGAACGACGTTGTTCTCAAGTCCACTTTCATCTCTGTTGCTTCGCCACTCAATCATCATCACCTCTGGCCTCGAAGCTCCTTCCGTTTTGTGATCTCAACATTGTAGCTCCTTCATCGGCCACAAGGTTCGGTTGCGATCTCAGTGAAATCTGA 1908 0.435 MRNRQTFHFMQWLKVENGPQYVCTDFWTFVCTNCSGIYRELTHRVKSVSMANFTSQEVTALQEGGNQRARNVYFKEWDGQQHSFPDSDNVNRLRDFIKHVYVDRRFTGDSTSDKRVKNGGDKDGSYENRRVEEGGSKSPPYEDSHEPCYSDRSSPGGRSPGYDQESRQVGNYKRSPGRPPVINDWHREERRKSDGDYKTEIPLRISGPPKRNNGKAANASTLTQRTASSGSLVSSNESQVNIKLETTKNLIDFDADPIASTIPQAQQTSAPQPVLQPGNSSDDNWASFDIASEKKANQNTSNLNPLESVLSQLSYSASLSSHASGVQGPIPAGALSFGSLSSFPSNDASMPSSGLEVVLPHNNVGKWASSQHQQPMFSAVNSQPSHVPSVPTGQGYPNSPMPHAYHRASKPANEAFNSILSQTSAVEVKPSGRTELSEDLFTAKHSSFSAPVQGWQAGLPQGRGISMQYNNNVAPIPSFSEPSRSTNPFDVGRKQTPDQDPDRQQPEEVEERQQPKQVSERLQQPEKVAQRQHLEQVVERKQPEKVAESRLPSDKVIPPQHAKTLLICFVFLYGSTKARFPLSSHERRCSQVHFHLCCFATQSSSPLASKLLPFCDLNIVAPSSATRFGCDLSEI 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05473 635 MobiDBLite consensus disorder prediction 526 551 - -
Vifa2g05473 635 SUPERFAMILY ArfGap/RecO-like zinc finger 17 107 IPR037278 -
Vifa2g05473 635 MobiDBLite consensus disorder prediction 466 553 - -
Vifa2g05473 635 CDD ArfGap_AGFG 16 106 - -
Vifa2g05473 635 MobiDBLite consensus disorder prediction 157 171 - -
Vifa2g05473 635 MobiDBLite consensus disorder prediction 109 149 - -
Vifa2g05473 635 SMART arf_gap_3 4 114 IPR001164 GO:0005096
Vifa2g05473 635 MobiDBLite consensus disorder prediction 109 238 - -
Vifa2g05473 635 Gene3D Arf GTPase activating protein 15 119 IPR038508 -
Vifa2g05473 635 MobiDBLite consensus disorder prediction 495 517 - -
Vifa2g05473 635 MobiDBLite consensus disorder prediction 180 199 - -
Vifa2g05473 635 ProSiteProfiles ARF GTPase-activating proteins domain profile. 1 114 IPR001164 GO:0005096
Vifa2g05473 635 MobiDBLite consensus disorder prediction 466 493 - -
Vifa2g05473 635 PANTHER ARFGAP/RECO-RELATED 18 194 IPR044820 GO:0005096
Vifa2g05473 635 Pfam Putative GTPase activating protein for Arf 17 107 IPR001164 GO:0005096
Vifa2g05473 635 MobiDBLite consensus disorder prediction 213 238 - -
Vifa2g05473 635 MobiDBLite consensus disorder prediction 264 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05473 Vifa-Chr2 1629162915 1629169974 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05473 19 106 C2H2 Transcription Factor Family AT3G07940 31.522 2.22e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05473 - - psat:127116115 797.734