Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05472 ATGTCAAAGAACCTTAAAAAATCCCTTCAACGTTATTTTAGAAAAATCAAAACTCAACATTCCCATCAACTCCGTTTACCCTCCAAGAAATGGATTAGTCTCAAAAGTTGCAAACATCCGAGAACTCCGTCTTTTTCCATCGAAAACAAAAACAACAAGGACGATGAAGCCACACTGGCCGACATCGACCAATTTCTATTCGAAAATTTTAAATCGTTGTTTCTTGATGAGCAAGAAGATGATCATCCTAACAAAAACACTAAATGTGTAGTCAAATCAGATGAAGATGAAGACAAAGATCAAGAAAAAATTAATGAAAAAAAATCATCAAATTTAGGGCGAATCGTTTTTGATTCATCCGAGAGAGGTTCACCTTTGGATCTTAATGGATCCAATAGATTTTTTACACCACGTGGTTTCTCGGGATCCACAACAACATCAACAACAAACACATTTGAAGAAATGGGATCATCCTCGAACTCCTCAACTTCGAAAACCTTCAATGTTGATTCATTTTCAAAGAAAGATAAAATAAATATTCCTAATAATTGTGTTGTTGTGTTGACTAGTTCACCAAATCCTTATGATGATTTCCGCAAATCTATGCAAGAAAATGTGGAAGCTAGGATTATGAAGAATCAAAGTGTGGATTGGGATTTCTTGGAAGAACTTTTGTTTTGTTATATAAACATGAATGAGAAGAAATCATGTAAGTTTATACTAAGTGCTTTTTGTGACTTGATTAGTGTCATGAGGCAGAGTTCAGATACCGAACCAGAGACGGATCCAGAGAAGCCGCGGAGTGTTCGAACCATTAGAAAGGGGAGGGATGTAAGGAAGAAGAAGAATAAAGAACTAAAATTATAG 867 0.3541 MSKNLKKSLQRYFRKIKTQHSHQLRLPSKKWISLKSCKHPRTPSFSIENKNNKDDEATLADIDQFLFENFKSLFLDEQEDDHPNKNTKCVVKSDEDEDKDQEKINEKKSSNLGRIVFDSSERGSPLDLNGSNRFFTPRGFSGSTTTSTTNTFEEMGSSSNSSTSKTFNVDSFSKKDKINIPNNCVVVLTSSPNPYDDFRKSMQENVEARIMKNQSVDWDFLEELLFCYINMNEKKSCKFILSAFCDLISVMRQSSDTEPETDPEKPRSVRTIRKGRDVRKKKNKELKL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05472 288 NCBIfam uncharacterized plant-specific domain TIGR01568 185 251 IPR006458 -
Vifa2g05472 288 MobiDBLite consensus disorder prediction 272 288 - -
Vifa2g05472 288 MobiDBLite consensus disorder prediction 139 166 - -
Vifa2g05472 288 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 58 251 IPR038933 GO:0045892
Vifa2g05472 288 MobiDBLite consensus disorder prediction 77 107 - -
Vifa2g05472 288 Pfam Transcriptional repressor, ovate 191 249 IPR006458 -
Vifa2g05472 288 MobiDBLite consensus disorder prediction 254 288 - -
Vifa2g05472 288 ProSiteProfiles OVATE domain profile. 187 250 IPR006458 -
Vifa2g05472 288 MobiDBLite consensus disorder prediction 257 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05472 Vifa-Chr2 1629154314 1629155180 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vifa2g05472 Ovate 7.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05472 - - tpra:123921622 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05472 2 1629154314 1629155180 Vifa2g05472 2 1629154314 1629155180 ECH
Vifa5g00169 5 22866001 22866873 Vifa2g05472 2 1629154314 1629155180 PCT