Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05437 ATGAGAAACTCATTCAAGACTTTTAACAAACACTTCACTTTCATTTCTTATGGTTTCATAACTTCTCCCACACACCTCACTTTCTCTCAATTCCGCTCATCATATTCCGAGTGTGTTTCAGGTCGTCTCGAGAGTGTGCCCCAGGTCTCAGCGTCTCCATCTTCTACATTTATGGAGGTATTCAAAGCAATTGCTAAGCAAGACCTTGCATCCCATGGAAATGTTGCTATCAGAGCTGATCAGAAGAGCTATAGTTACAAGCAACTCATCTCGTCAGCACTAAAGATTTCTAATCTCTTATGTGGAAGTGATGCCAAAGGAAATCTTGCTGGAGCTCGAGTAGGAATTGTAGCCAAACCCTCTGCTGAATTTGTTGCTGGAATACTTGGGACTTGGCTTCGTGGAGGTGTTGCTGTTCCACTTGCTGTCAGCTATCCAGAAGTAGAGCTTCTGTATGTCATGAATAATTCGGACACATCTGCAATACTGAGTACTGAAGATCATAGTGAACTAATGCAAAACATTGCCAATAAAACCTCTTCAAATTTTTTTCATCTTCCACCTGTTGCTAATAATTCGTTAGATAAGAACAGAGATGAACATTCACAAAATGGAGAAATTGATGCAGCCAGAATTTTCCTGGAGAGTATTGAAAGATCAAGTGAAGACCCGGCACTCATTTTGTACACTAGCGGAACAACAGGTAAACCTAAGGGAGTTGTTCATACACACAGAAGCATCATTGCTCAGGTCCAATCATTGACAAAAGCGTGGGAGTACACTTCTACCGATCAGTTTTTGCATTTTAGGGAACATATTACTAGTATTTTGTATATTTTCTGTTTCTGTATGATTTGGGATATCTTTATGATGTCAATCCTTAACATACATGATATACATGTCCATGGGCTTTTCAACGGTTTACTGGCCCCTCTCTACGCAGGTTCCACGGTTGAGTTTTTGCCGAAATTTAGTGTCAGGGGAGTTTGGCAGAGATGGCGCGAGTCATATCCAAATGAAGGGTCTAAGGCTGATGATGCTATAACAGTATTCACTGGAGTTCCAACTATATATGCTCGATTAATTCAAGGTTATCGTGCGATGGATCCCGAGCTACAAGCTGCTTCAGCATCGGCTGCAAAGAACTTGCGTCTAATGATGTGTGGGTCCTCGGCACTTCCTCAACCTGTTATGCTAGAATGGGAAGCCATCACCGGGCACCGCTTATTGGAGCGATATGGCATGACTGAATTTGTCATGGCATTGTCAAATCCATTGAAAGGTGAGCGTAAGGCAGGCACAGTTGGAAAACCACTGCCAGGCGTGCAGGTCAAGATTCTTTCAGATGGGGAGAATTGGAGTGAAAAAACAGGAGCCGGCGGCGAGCTTTGCGTTAAAAGTCCTTCACTGTTTAAAGAATATTGGAAACTTCCAGAGGTAACGAAGGAATCATTTACGGAAGAAGGATTCTATAAGACTGGAGATGCCGTTACAACAGATAAAGATGGATATTACATCATTCTAGGACGTACTAATGCGGATATCATCAAGGCCGGTGGCTATAAGCTGTCTGCATTAGAAATCGAATCAGTTATAATAGAGCATCCAAGTGTCTCAGAATGTTGTGTCTTGGGCTTACCACACAAAGAATATGGAGAAATTGTCGGTGCAATTGTCGTGCCAGAGGCTGATATTAAACGAAAGCAAGATGAAGAATCAAAGCCGGCTCTAAGCCTAGAAGAATTATCCACCTGGGCCAAAGATAAACTTGCACCTTACAAGATACCAACTCGACTAATCGTGTGGGACTCACTCCCCCGCAATGCAATGGGAAAGGTCAGTAAAAAAGAGCTGAAGAAGTTTCTAGCTCCGGAACAGTAA 1881 0.4258 MRNSFKTFNKHFTFISYGFITSPTHLTFSQFRSSYSECVSGRLESVPQVSASPSSTFMEVFKAIAKQDLASHGNVAIRADQKSYSYKQLISSALKISNLLCGSDAKGNLAGARVGIVAKPSAEFVAGILGTWLRGGVAVPLAVSYPEVELLYVMNNSDTSAILSTEDHSELMQNIANKTSSNFFHLPPVANNSLDKNRDEHSQNGEIDAARIFLESIERSSEDPALILYTSGTTGKPKGVVHTHRSIIAQVQSLTKAWEYTSTDQFLHFREHITSILYIFCFCMIWDIFMMSILNIHDIHVHGLFNGLLAPLYAGSTVEFLPKFSVRGVWQRWRESYPNEGSKADDAITVFTGVPTIYARLIQGYRAMDPELQAASASAAKNLRLMMCGSSALPQPVMLEWEAITGHRLLERYGMTEFVMALSNPLKGERKAGTVGKPLPGVQVKILSDGENWSEKTGAGGELCVKSPSLFKEYWKLPEVTKESFTEEGFYKTGDAVTTDKDGYYIILGRTNADIIKAGGYKLSALEIESVIIEHPSVSECCVLGLPHKEYGEIVGAIVVPEADIKRKQDEESKPALSLEELSTWAKDKLAPYKIPTRLIVWDSLPRNAMGKVSKKELKKFLAPEQ 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05437 626 Gene3D - 513 624 IPR045851 -
Vifa2g05437 626 Pfam AMP-binding enzyme 72 516 IPR000873 -
Vifa2g05437 626 SUPERFAMILY Acetyl-CoA synthetase-like 51 624 - -
Vifa2g05437 626 CDD MCS 75 620 - -
Vifa2g05437 626 Gene3D - 61 510 IPR042099 -
Vifa2g05437 626 ProSitePatterns Putative AMP-binding domain signature. 227 238 IPR020845 -
Vifa2g05437 626 Pfam AMP-binding enzyme C-terminal domain 527 612 IPR025110 -
Vifa2g05437 626 PANTHER ACYL-COA SYNTHETASE 58 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05437 Vifa-Chr2 1619374887 1619380274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05437 222 622 Monolignol Biosynthesis Gene Families AT4G19010 26.747 1.29e-36 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05437 K18660 - gmx:100813324 904.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05437 2 1619374887 1619380274 Vifa2g05437 2 1619374887 1619380274 ECH