Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05426 ATGTCTTTTAGTTTCAACAACAACAACCTTTTCAACACCAACAATAACCTTAGTACAACCTTTGATATTGCTAAACTTGTTGGAAGTTCTCCTCAACTCAAAACTCATGATGATGATAGTTTTGAACTTGATGAAGTAATTTATAACACTTGTTATTCTGATTTTCCACCTGGCTTTAGACCTTCAGAGTTATTGAGTTCACCTTCTTTTCTTTCACCTTCCAATAATATTCCTTCATCTTATACAACTGAGCCTTCTTGTGACCAAATCACCAACCAACAACATAACAAGGAATTAGAAGATAGAAACTTCTCTGAGTTATCTTTTCAAACACAAAAACAGAACATGCAAGAACCTTTTCAATCTTCAACAACTATGTATCAAGTGGAGGAGCCAATAAAGAAACATGACACATTAACATTCAATGAAACCAATGCTTCTATGTCTTTGAAAGAACAAAAAAGATCAGAAGAAGATGGATACAAGTGGAGAAAATATGGAGAAAAACAAGTGAAAGGAAGTGAAAATCCAAGAAGTTATTACAAGTGTACTAATTCAGTTTGCTTGATGAGGAAGAAAGTTGAAAGGTCTTTGGAGGGACATATTATTGAAATTGTGTATAAGGGAAGTCATAACCATCCTAAGCCTCCGTGTACAAAGAGAAAAACAAGTTCTCAATCTATTCATCAAGGTTTTACATCCAGCAACAATTCGTTGATTTCAGATCCTTCTTTGGGGGAGTATGAATTTGAGCAAACATCACAAACTAGTTTTTCCGGAAGAGATTATGATGAGTTGGGAATCGAGGCCAAGAGATGGAAGGGAGAGAATGAAAATGATAGCTATCATTATTCCACAGAAGAGAGTAGAACAGTTCGGGAAGCTAGAGTTGTGGTTCAAACTACAAGTGAAATTGATATTCTTGATGATGGATATAGATGGAGAAAATATGGACAAAAAGTTGTTAAAGGAAATCCAAATCCAAGGAGCTACTACAAATGTGTAATCCAAGGTTGTCCTGTGAGAAAACATGTTGAGAGAGCAGCACATGATATGAAAGCTGTAATCACAACATATGAAGGGAAACATAACCATGAAATACCTCTAGGAAGAGGAAGTTCAAGCTATAACATGAACAAAACATCTCTTAACAACAACACCACATGTAATGTAACCCCTATAAGGCCTTCACCAGTGACTAATTATTCTATCTTATCAAATTTCACACATTCACTTCATGATTCAAAGCTACCTAATTTTGAAACTCAAGTACAACCTTTTCAGCTAAATATGATGCTGAATTCTACAAGCCTTTTGGACAAACCAACCGATTCAAATGCTGATTATGAACGATCGGCTAAGGAAAACTCGTTCCTTTAG 1380 0.3529 MSFSFNNNNLFNTNNNLSTTFDIAKLVGSSPQLKTHDDDSFELDEVIYNTCYSDFPPGFRPSELLSSPSFLSPSNNIPSSYTTEPSCDQITNQQHNKELEDRNFSELSFQTQKQNMQEPFQSSTTMYQVEEPIKKHDTLTFNETNASMSLKEQKRSEEDGYKWRKYGEKQVKGSENPRSYYKCTNSVCLMRKKVERSLEGHIIEIVYKGSHNHPKPPCTKRKTSSQSIHQGFTSSNNSLISDPSLGEYEFEQTSQTSFSGRDYDELGIEAKRWKGENENDSYHYSTEESRTVREARVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVIQGCPVRKHVERAAHDMKAVITTYEGKHNHEIPLGRGSSSYNMNKTSLNNNTTCNVTPIRPSPVTNYSILSNFTHSLHDSKLPNFETQVQPFQLNMMLNSTSLLDKPTDSNADYERSAKENSFL 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05426 459 SUPERFAMILY WRKY DNA-binding domain 300 368 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g05426 459 FunFam WRKY transcription factor 144 217 - -
Vifa2g05426 459 Gene3D WRKY domain 293 369 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g05426 459 Gene3D WRKY domain 142 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g05426 459 ProSiteProfiles WRKY domain profile. 303 368 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g05426 459 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 89 385 IPR044810 GO:0003700
Vifa2g05426 459 SUPERFAMILY WRKY DNA-binding domain 156 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g05426 459 MobiDBLite consensus disorder prediction 210 240 - -
Vifa2g05426 459 SMART WRKY_cls 157 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g05426 459 SMART WRKY_cls 308 367 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g05426 459 MobiDBLite consensus disorder prediction 438 459 - -
Vifa2g05426 459 FunFam WRKY transcription factor 33 295 361 - -
Vifa2g05426 459 MobiDBLite consensus disorder prediction 219 240 - -
Vifa2g05426 459 Pfam WRKY DNA -binding domain 309 366 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g05426 459 Pfam WRKY DNA -binding domain 158 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g05426 459 ProSiteProfiles WRKY domain profile. 158 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05426 Vifa-Chr2 1615782740 1615785176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05426 59 431 WRKY Transcription Factor Family AT2G38470 45.116 1.45e-100 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa2g05426 WRKY 1.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05426 K13424 - gmx:102666898 476.863