Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05411 ATGGAGAACAACACTAAAGATTTGATTTTTAGTACAAAAAACCAAAAGGGAGATTTATGGGATGGTGTTATTGTAACACAATCTGATTTTCAATCTCTACAAGCTATCAAAACTGAACTTATAGACTCAAAAGGTGTTCTTAAAACATGGAATGATAGTGGCTTAGGTGCTTGTTCAGGTAACTGGGTTGGAATCAAATGCTTAAAAGGTGAAGTTATTGCAATTCAGCTTCCTTGGAAGAGCTTATCAGGAAGAATCTCTGAGAAGATTGGTCAACTTCAATCTCTTAGAAAACTTAGTCTTCATGATAACAATCTTGCTGGTTCAGTTCCTTTTTCTCTTGGTTTTCTTCCTAATCTTAGAGGTGTTTATCTTTTTAACAACAAGCTTTCAGGTTCTATTCCTCCTTCTATTGCTAATTTGCCAATGCTTCAAGCTTTTGATGTTAGTCATAATTTGCTTATTGGTAGAATCCCTTTTGGTTTGATGAATTCCACTAGGATTTTCAGGGTTAATTTGAGTTATAACAAACTTTCTGGTTCTATTCCTAGTGAAGTAGGTGAGTTTTCAAGGCTTAGGGTTCTTGATTTGTCAAACAATGAAATCAATGGTAGTTTGCCTTTCAGTTTCTCTAATTTATCTTCTCTTGTTTCATTGAATCTTGAAAACAATAAACTTGGTGGTGAAATTCCTGATTCTTTTACGAAACTTCGAAATCTAAGTTCATTCAATGTTTCTCATAATAATCTATCTGGTCATGTTCCATTAGTACTTTCCAAAAGATTCAATGCTAGTTCATTTGAAGGAAATTTTGGTTTATGTGGTTACATAAGTTCGAAACCATGTCGTTCTTCACCACCACCGCCAAGGCCGCCACCACCTCATAATCTTCCGTCTCAATCACCGGAAGAATCTCCTTCGAAGATACATGACCGGAAATTGAGTACTAAGGATACAATCCTCATAGTAGCAGGTGTTCTTTTGTTGATTTTGCTATTACTGTGTTGCTTTTTGCTTTGTTGTTTGGTCAGGAAAAGAGCTTCTTCAAGTAGGAAGAGTGGTAAAGCTGCTAAAGCTGCTGCTTCTACTAGGAGTCTGGAGAAAGGTGGTGGTGGAGAGGTTGCATCAGGAGGTGAAGCTGGTGGGAAGCTTGTTCACTTTGATGGGCCGTTTGTGTTCACTGCTGATGATCTTTTGTGTGCAACGGCGGAGATAATGGGAAAAAGTGCTTATGGAACTGCTTATAAGGCGACGTTGGAAGATGGTAATCAAGTTTCTGTGAAGAGGTTGAGGGAGAAGACTACTAAAGGACATAAGGAGTTTGAAGGCGAGGTTGCTTTGCTTGGAAAAATTAGGCATCCCAATTTGTTGGCTCTTAGAGCTTACTATCTTGGACCTAAAGGAGAGAAGCTTCTTGTGTTTGATTACATGAGTCGAGGAAGCCTAGCATCATTCCTTCATGCTCGCGGGGCGGAAATCATCGTCGAATGGCCAACAAGGATGAAAATAGCAATTGGAATCAGCAACGGTCTATCTTGCCTCCACAACCAAGAAAACATAGTACATGGAAATCTCATCTCAAGCAACATACTATTAGACGAGCAAACAAATCCTCACATAACCGATTTCGGTCTTTCAAGACTAATGACAACTTCAGCCAACACAAACATCATTGCCACAGCAGGCAGCCTCGGTTACAACGCACCGGAGCTTTCAAAGACAAAGAAGCCAACCACGAAAACCGATGTTTACAGCCTCGGCGTCATCCTTTTGGAGCTTTTAACCGGTAAACCGCCGGGGGAACCAACCAATGGCATGGATTTACCTCAATGGGTTGCTTCCATAGTTAAAGAAGAATGGACTAATGAAGTTTTTGATTTGGAACTCATGAGGGATGCACCTACCATAGGAGATGAACTTCTTAATACATTGAAATTGGCTTTGCATTGTGTTGATCCTTCACCTTCTGCTAGACCTGAAGTTAAGCAAGTTTTGCAGCAGTTAGAAGAGATTAAGCCAGAATTGGTTGAAGTTGAAGTTGATGAGGATGGAGCTAAAGTTCAAACAAATGAATAA 2076 0.396 MENNTKDLIFSTKNQKGDLWDGVIVTQSDFQSLQAIKTELIDSKGVLKTWNDSGLGACSGNWVGIKCLKGEVIAIQLPWKSLSGRISEKIGQLQSLRKLSLHDNNLAGSVPFSLGFLPNLRGVYLFNNKLSGSIPPSIANLPMLQAFDVSHNLLIGRIPFGLMNSTRIFRVNLSYNKLSGSIPSEVGEFSRLRVLDLSNNEINGSLPFSFSNLSSLVSLNLENNKLGGEIPDSFTKLRNLSSFNVSHNNLSGHVPLVLSKRFNASSFEGNFGLCGYISSKPCRSSPPPPRPPPPHNLPSQSPEESPSKIHDRKLSTKDTILIVAGVLLLILLLLCCFLLCCLVRKRASSSRKSGKAAKAAASTRSLEKGGGGEVASGGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSAYGTAYKATLEDGNQVSVKRLREKTTKGHKEFEGEVALLGKIRHPNLLALRAYYLGPKGEKLLVFDYMSRGSLASFLHARGAEIIVEWPTRMKIAIGISNGLSCLHNQENIVHGNLISSNILLDEQTNPHITDFGLSRLMTTSANTNIIATAGSLGYNAPELSKTKKPTTKTDVYSLGVILLELLTGKPPGEPTNGMDLPQWVASIVKEEWTNEVFDLELMRDAPTIGDELLNTLKLALHCVDPSPSARPEVKQVLQQLEEIKPELVEVEVDEDGAKVQTNE 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05411 691 FunFam Pollen receptor-like kinase 1 477 682 - -
Vifa2g05411 691 SUPERFAMILY Protein kinase-like (PK-like) 404 674 IPR011009 -
Vifa2g05411 691 Pfam Leucine rich repeat 190 250 IPR001611 GO:0005515
Vifa2g05411 691 Pfam Leucine rich repeat 95 154 IPR001611 GO:0005515
Vifa2g05411 691 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 65 671 - -
Vifa2g05411 691 Gene3D Ribonuclease Inhibitor 166 284 IPR032675 -
Vifa2g05411 691 Gene3D Ribonuclease Inhibitor 25 165 IPR032675 -
Vifa2g05411 691 Gene3D Transferase(Phosphotransferase) domain 1 478 688 - -
Vifa2g05411 691 SMART LRR_typ_2 93 116 IPR003591 -
Vifa2g05411 691 SMART LRR_typ_2 237 260 IPR003591 -
Vifa2g05411 691 SMART LRR_typ_2 189 212 IPR003591 -
Vifa2g05411 691 SMART LRR_typ_2 213 236 IPR003591 -
Vifa2g05411 691 SMART LRR_typ_2 117 141 IPR003591 -
Vifa2g05411 691 ProSiteProfiles Protein kinase domain profile. 400 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g05411 691 FunFam Leucine-rich repeat receptor-like kinase 28 125 - -
Vifa2g05411 691 Pfam Protein tyrosine and serine/threonine kinase 404 668 IPR001245 GO:0004672|GO:0006468
Vifa2g05411 691 FunFam Leucine-rich repeat receptor-like protein kinase 385 476 - -
Vifa2g05411 691 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 161 282 - -
Vifa2g05411 691 CDD STKc_IRAK 406 671 - -
Vifa2g05411 691 Gene3D Phosphorylase Kinase; domain 1 406 477 - -
Vifa2g05411 691 SUPERFAMILY L domain-like 27 259 - -
Vifa2g05411 691 MobiDBLite consensus disorder prediction 353 374 - -
Vifa2g05411 691 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Vifa2g05411 691 MobiDBLite consensus disorder prediction 282 300 - -
Vifa2g05411 691 MobiDBLite consensus disorder prediction 282 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05411 Vifa-Chr2 1611184918 1611187406 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05411 20 673 Receptor kinase-like Gene Family AT3G51740 56.427 0.0 776
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa2g05411 PK_Tyr_Ser-Thr 1.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05411 - - csin:114314620 802.357