LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g05408	ATGAAGTTATTTCTCTTAATCTTCTTCCTTCTTTGCTTTCATTTTCTCTTCAGCTTCACACTTTCTCTCTCCTCCGATGGTCTAGCACTTCTCTCTCTAAAATCCGCCGTTGATCAATCCAGCGACGGCGCATTCTTTGACTGGAACGGCGGCGATTCTTACCCCTGCGGCTGGTCGGGAATTTCCTGTGCGAATATCTCTGGTATTCCGGAGCCACGTGTCGTCGGAATTGCTCTCGCCGGGAAGTCTCTTCGTGGTTATCTTCCTTCGGAGCTTGGTACTCTTCGCTATCTTCGCCGTCTTAATCTTCATGATAATGAATTCTATGGTGTTGTTCCAATGCAGCTGTTTAATGCTACTGCACTTCATAGTATTTTTCTTCACCGGAATAATCTCTCCGGTCCGTTTCCGGCTTCCGTTTGTGCCATTCCACGTCTGCAGAACCTTGACCTATCTGTTAATTCATTATCCGGCAAAATTCCTGATGATGTTAAGAAATGTAAGAATCTTCAGAGGCTTATTCTAGCGAGGAACAAGTTCACCGGAGAGATTCCAACCGGCGTGTGGTCGGAACTTGATAAGCTCATCCAACTCGACCTCTCCGCGAATGATTTCAAAGGTTCGATCCCGGACGACATAGGCGACCTTGTTTCCCTATCCGGCACTCTAAACCTTTCATTCAACCACTTTTCCGGCCGAATTCCGGGCTCACTTGGGAAATTACCCGCCACCGTGAACTTCGACCTACGAAACAATAATCTAATGGGCGAGATTCCACAAACGGGAACATTTTCGAACCAGGGCCCAACTGCATTCCTTGGTAACACAAACCTGTGCGGACTTCCACTAAGAAAATCTTGCACAGGTTCTGGCTCGTCTTCTCACAAAGACGAGTCAGGTAACGGTTCGAAAGGGTTGAGCCCTGGTTTGATTATTTTGATCTCAGCAGCTGATGTTGTTGGGGTCGCACTTGTTGGATTATTGATTGTTTATGTTTATTGGAAGAAGAAAGATGATGAAAATGCATGTAGTTGCATAAGGAAAAGAAGGTTTGGTGATGAGAATGAGAGTGAGAAAGGGAATGCTTGTACTTTGCTTCCATGTATGAATGGTTTGAAGAATGAAGAAGGTAATGATGAGAGTGAAATGGAGGGAGATGGAGGGAAAGGAGAAGGTGAATTGGTGACAATTGATAAAGGTTTTAGGATTGAGCTTGATGAGCTTTTGAAGGCATCAGCATATGTGTTGGGGAAGAGTGCATTAGGGATTGTGTATAAGGTGGTGCTTGGAAATGGGGTTCCGGTCGCGGTGAGGAGATTAGGGGAAGGTGGAGAAGAGAGGTATAAGGAGTTTGTGACAGAGGTGCAAGCCATTGGGAAGGTGAAGCATCCTAATATTGTGAGGTTGAGAGCTTACTATTGGGCTCATGATGAAAAGCTTCTCATTAGTGATTTCATCTCTAATGGCAATTTGGCAAATGCACTTCGAGGTAGAAATGGCCAACCATCTTCAAACCTTTCATGGTCAACAAGGTTAAGAATTTCAAAAGGAATAGCTAGAGGCTTATCCTATCTTCATGAATTTAGTCCTAGAAAATTTGTCCATGGTGACATAAAACTCACAAACATCCTACTCGACAACGACTTACAACCCTACATTTCCGATTTCGGTCTCAACCGACTAATCAGCATCACAGGAAACAACCCTTCTATTGGCGGATTCATGGGCGGAGCACTACCTTACATGATGAAAACATCACAGAAAACGAATAACAGGTTGTCATTAGACAACAGTCGTAGTAACAATTACAAAGCTCCCGAGGCTCGTGTGCCCGGCTGTAGACCAACACAGAAATGGGATGTTTATTCATTAGGCGTCATTTTGCTTGAGTTGTTAACTGGGAAATCTACGGAATCTTCTCCAACGTCCGCATCTTCATCGGCTTCTGTTGAAGTTTCTGATTTGGTAAGATGGGTGAGAAATGGATTTGATCAAGAAAGTCCATTATCTGAAATGGTTGATCCGTCTCTGTTACAAGAAGTTCGCGCGAAGAAAGAGGTTTTGGCTGTGTTTCATGTTGCACTTGCTTGTACTGAAGGTGATCCTGAAGTTAGGCCTAGAATGAAAACTGTGTCTGAAAATCTTGAAAGAATTGGAAGGTAA	2163	0.4401	MKLFLLIFFLLCFHFLFSFTLSLSSDGLALLSLKSAVDQSSDGAFFDWNGGDSYPCGWSGISCANISGIPEPRVVGIALAGKSLRGYLPSELGTLRYLRRLNLHDNEFYGVVPMQLFNATALHSIFLHRNNLSGPFPASVCAIPRLQNLDLSVNSLSGKIPDDVKKCKNLQRLILARNKFTGEIPTGVWSELDKLIQLDLSANDFKGSIPDDIGDLVSLSGTLNLSFNHFSGRIPGSLGKLPATVNFDLRNNNLMGEIPQTGTFSNQGPTAFLGNTNLCGLPLRKSCTGSGSSSHKDESGNGSKGLSPGLIILISAADVVGVALVGLLIVYVYWKKKDDENACSCIRKRRFGDENESEKGNACTLLPCMNGLKNEEGNDESEMEGDGGKGEGELVTIDKGFRIELDELLKASAYVLGKSALGIVYKVVLGNGVPVAVRRLGEGGEERYKEFVTEVQAIGKVKHPNIVRLRAYYWAHDEKLLISDFISNGNLANALRGRNGQPSSNLSWSTRLRISKGIARGLSYLHEFSPRKFVHGDIKLTNILLDNDLQPYISDFGLNRLISITGNNPSIGGFMGGALPYMMKTSQKTNNRLSLDNSRSNNYKAPEARVPGCRPTQKWDVYSLGVILLELLTGKSTESSPTSASSSASVEVSDLVRWVRNGFDQESPLSEMVDPSLLQEVRAKKEVLAVFHVALACTEGDPEVRPRMKTVSENLERIGR	720

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g05408	720	Gene3D	Ribonuclease Inhibitor	23	187	IPR032675	-
	Vifa2g05408	720	Gene3D	Ribonuclease Inhibitor	188	289	IPR032675	-
	Vifa2g05408	720	Pfam	Leucine rich repeat N-terminal domain	24	63	IPR013210	-
	Vifa2g05408	720	Gene3D	Transferase(Phosphotransferase) domain 1	486	718	-	-
	Vifa2g05408	720	FunFam	Leucine-rich repeat receptor-like protein kinase	23	186	-	-
	Vifa2g05408	720	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	533	545	IPR008271	GO:0004672\|GO:0006468
	Vifa2g05408	720	FunFam	Os07g0541700 protein	492	571	-	-
	Vifa2g05408	720	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1	145	718	IPR046959	-
	Vifa2g05408	720	SUPERFAMILY	L domain-like	25	284	-	-
	Vifa2g05408	720	ProSiteProfiles	Protein kinase domain profile.	410	718	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa2g05408	720	SUPERFAMILY	Protein kinase-like (PK-like)	415	715	IPR011009	-
	Vifa2g05408	720	Gene3D	Phosphorylase Kinase; domain 1	399	485	-	-
	Vifa2g05408	720	SMART	serkin_6	410	718	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa2g05408	720	FunFam	Leucine-rich repeat receptor-like protein kinase	194	289	-	-
	Vifa2g05408	720	Pfam	Protein kinase domain	415	644	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa2g05408	720	FunFam	Leucine-rich repeat receptor-like protein kinase	393	485	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g05408	Vifa-Chr2	1610310045	1610313180	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g05408	18	718	Receptor kinase-like Gene Family	AT1G67510	65.972	0.0	922

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-III	Vifa2g05408		Pkinase	4e-30	CL0016
	TF	S1Fa-like	Vifa2g05408		Pkinase	4e-30	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g05408	-		-	gmx:100787556	1041.18