Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05400 ATGGAGAATCTTGTTACTGATTTATTGACCACTCTAAATTTACCTGAATATCCTGCTTCAGCTTCTATTCTAGAGGTTCTATGTGCCATACTAATTCAGAATGCTGGGACAAGTTCCAAGGATTTTGCTTCAAGTTCCATGGCAATTGATATTCTTGGCACTATTGCGGCAAGGTTGAAGCATGATGCTGTGATTTGTAGCCAGGAAAAGTTTTGGGTACTTCAAGATTTACTTAGTAAGGATGCTGCTCCTCAGAATTATCCGAAAGATACATGTTGTGCCTGTTTGGGTGGAAGGGCTGAAAATTTGTTCCCATGTTCCGGTTGCAATAGGCTTTTTCATACTGAATGCCTGGACATTGAAGAAGATGAAGTTCTCAATCAGAACTGGTACTGTCACATGTGCATCTGCTCAAAGCAACTGGCTGCTGAAGGAATCATTTGTAGGACAGAAGCTTGA 459 0.4096 MENLVTDLLTTLNLPEYPASASILEVLCAILIQNAGTSSKDFASSSMAIDILGTIAARLKHDAVICSQEKFWVLQDLLSKDAAPQNYPKDTCCACLGGRAENLFPCSGCNRLFHTECLDIEEDEVLNQNWYCHMCICSKQLAAEGIICRTEA 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05400 152 ProSiteProfiles Zinc finger PHD-type profile. 89 138 IPR019787 -
Vifa2g05400 152 Pfam PHD-finger 92 137 IPR019787 -
Vifa2g05400 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 147 IPR013083 -
Vifa2g05400 152 SUPERFAMILY FYVE/PHD zinc finger 88 145 IPR011011 -
Vifa2g05400 152 ProSitePatterns Zinc finger PHD-type signature. 92 135 IPR019786 -
Vifa2g05400 152 PANTHER NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED 1 83 IPR033031 GO:0003682|GO:0010468|GO:0061780
Vifa2g05400 152 SMART PHD_3 91 136 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05400 Vifa-Chr2 1606714831 1606715289 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa2g05400 PHD 4.6e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05400 K06672 - gmx:100792021 218.009