Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05381 ATGATAGTTGCTATGGATTTGAATGCGTCTCCGGTACCGGAGGAGGAAGATGAAGATGTTTACGAAGAGAAGATACATGTTCAAGAGTATAGTGCACCTGAAGACCACGTAGAAAGTGGAGCTGCTATAGCACGCCGGGAGCGCGAGGAAAGAAAGAGACGCTTGAAAAGAGAACGTCCAGATGATAAACCTGTGAATCGATCACAATCACCTCGATATGATCAACAGTTTCATACAAAAAACCCTAAATCATATGATACAAGTAGGCTTCCTCCGGGTTGGCTAGATTGCCCTGCATCTGGCCAGGAGATTTGTTGCATGATACCTTCTAAAGTTCCTCTTGGTGAATCATTCAATGACTGCATTTTTCCTGGTAAAAGATACTCATTTAAACAAGTGATACATCAACAGAGAGTTTTAGGGAGGAAACTCGGTCTGGTGATTGATTTGACAAACACCTCTCGATACTATCCAGTGACGGATTTAAAAAAAGAGGGCATCAAGCATGTTAAGATTCAATGCAGGGGGCGTGGTTCTGTACCTGATAATTTATCTGTGAATCAGTTTGTCTATGAGGTTATACAGTTTTTGTCACGCCAAAAGCAGTCAAAGAAGTATATACTTGTTCACTGTACACACGGGCATAACCGTACCGGATACATGATTATCCACTATCTAATGCGTTCTATGTCAATGTCTGTTACACAGGCAATTAAAATTTTTTCTGAAGCGCGCCCTCCAGGAATTTATAAACCTGATTATATTGATGCATTGTACACATTTTATCATGAAAAAAAACCCGAGATGGTAGTTTGTCCTCCTACTCCAGAATGGAAAAGGTCTTCTGAACTTGATCTCAATGGTGAAGCTGTTCCAGACGATGATGATGATGGAGTACCGGGCCCTGATTTGCAGGAGAACATTGAGACAGGCACTCAGATGACGAATGATGATGTTTTAGGAGATGAGATACCCAGCGATCAGCAAGATGCATTTCGACAGTTCTGTTATCAAACACTTAGATTGGGTGTTGGGGGCAGAGGACATACACAGTTTCCAGGTTCACACCCAGTTTCTCTCAACAGGGATAATTTGCAGTTATTACGACAGCGTTATTATTATGCAACATGGAAAGCTGATGGGACACGGTATATGATGTTAATAACAATGGATGGGTGTTACTTGATTGATAGAAGCTTTAATTGTCGAAGGGTCCAAATGAGGTTTCCTTGCAGGAGTGTGAATGATGGTTTGGGTGAGAAGACCCACCATTTCACATTACTTGACGGTGAAATGGTTATCGATACTTTGCCAGATTCAAATAAGCAGGAAAGAAGATACCTTATATATGACCTTATGGCAATCAACCACGTTTCAATAATAGAGCGACCCTTCTGTGAAAGATGGAAGATGCTTGAAAAAGAAGTGATTGAACCTAGGAATCATGAACGACAACATATATACCAGAGCAGAAATCCTTACTACAGATATGATCTGGAACCATTCAGGGTTAGGAGGAAAGATTTTTGGTTGCTTTCTACTGTCACAAAGCTTTTAAAGGAATTCATCAAAAGACTCTCACATGAGGCAGATGGTCTCATATTTCAGGGTTGGGACGATCCTTATGTACCACGTACTCATGAAGGACTCTTAAAGTGGAAATACGCTAATTTAAATTCAGTCGACTTTCTGTTTGAGGTCGAAGGTGACCGGGAGCTACTTTTTGTGAATGAGCGGGGAAAGAAGAAACTCATGGATGGGAATAAGGTTGCTTTCCCAGATGGTTCGGAACCCTCACTTTATTCGGGAAAGATAATTGAGTGTACTTGGGATTTTGATAACCTGGAATGGATATTCTTGCGAATTAGGACAGATAAATCAACTCCAAATGAGTTTAATACTTACAGAAAGGTGATGCGAAGCATAAAAGACAACATCACAGAAGAAGACTTGTTGAATGAAATAAATGAGATAATTCGCCTTCCCATGTACGCGGACAGGATCAAATCTGATAGTAAAGCAAATCAGCATCAGCATCAGCATGGTAATGCTGCAAAGCGGAGGTGA 2067 0.4088 MIVAMDLNASPVPEEEDEDVYEEKIHVQEYSAPEDHVESGAAIARREREERKRRLKRERPDDKPVNRSQSPRYDQQFHTKNPKSYDTSRLPPGWLDCPASGQEICCMIPSKVPLGESFNDCIFPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVTDLKKEGIKHVKIQCRGRGSVPDNLSVNQFVYEVIQFLSRQKQSKKYILVHCTHGHNRTGYMIIHYLMRSMSMSVTQAIKIFSEARPPGIYKPDYIDALYTFYHEKKPEMVVCPPTPEWKRSSELDLNGEAVPDDDDDGVPGPDLQENIETGTQMTNDDVLGDEIPSDQQDAFRQFCYQTLRLGVGGRGHTQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRSFNCRRVQMRFPCRSVNDGLGEKTHHFTLLDGEMVIDTLPDSNKQERRYLIYDLMAINHVSIIERPFCERWKMLEKEVIEPRNHERQHIYQSRNPYYRYDLEPFRVRRKDFWLLSTVTKLLKEFIKRLSHEADGLIFQGWDDPYVPRTHEGLLKWKYANLNSVDFLFEVEGDRELLFVNERGKKKLMDGNKVAFPDGSEPSLYSGKIIECTWDFDNLEWIFLRIRTDKSTPNEFNTYRKVMRSIKDNITEEDLLNEINEIIRLPMYADRIKSDSKANQHQHQHGNAAKRR 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05381 688 SMART dsp_5 124 264 IPR020422 GO:0006470|GO:0008138
Vifa2g05381 688 Pfam mRNA capping enzyme, catalytic domain 356 554 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vifa2g05381 688 PIRSF mRNA_capping_HCE 76 688 IPR017074 GO:0004484|GO:0006370|GO:0140818
Vifa2g05381 688 Gene3D - 594 661 IPR012340 -
Vifa2g05381 688 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 187 256 IPR000387 GO:0016311|GO:0016791
Vifa2g05381 688 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 317 555 - -
Vifa2g05381 688 FunFam mRNA capping enzyme, putative 315 552 - -
Vifa2g05381 688 FunFam mRNA-capping enzyme 576 669 - -
Vifa2g05381 688 FunFam mRNA capping enzyme family protein 86 300 - -
Vifa2g05381 688 CDD Adenylation_mRNA_capping 344 555 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vifa2g05381 688 MobiDBLite consensus disorder prediction 23 68 - -
Vifa2g05381 688 PANTHER MRNA-CAPPING ENZYME 85 666 - -
Vifa2g05381 688 SUPERFAMILY Nucleic acid-binding proteins 557 669 IPR012340 -
Vifa2g05381 688 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 90 279 IPR029021 -
Vifa2g05381 688 Pfam mRNA capping enzyme, C-terminal domain 559 652 IPR013846 -
Vifa2g05381 688 ProSiteProfiles Dual specificity protein phosphatase domain profile. 112 268 IPR020422 GO:0006470|GO:0008138
Vifa2g05381 688 Pfam Dual specificity phosphatase, catalytic domain 142 262 IPR000340 GO:0008138|GO:0016311
Vifa2g05381 688 ProSitePatterns Tyrosine specific protein phosphatases active site. 209 219 IPR016130 GO:0016311|GO:0016791
Vifa2g05381 688 ProSiteProfiles ATP-dependent DNA ligase family profile. 447 610 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vifa2g05381 688 CDD RNA_5'-triphosphatase 93 259 - -
Vifa2g05381 688 Gene3D Protein tyrosine phosphatase superfamily 65 285 IPR029021 -
Vifa2g05381 688 MobiDBLite consensus disorder prediction 69 86 - -
Vifa2g05381 688 MobiDBLite consensus disorder prediction 1 89 - -
Vifa2g05381 688 Gene3D DNA ligase/mRNA capping enzyme 315 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05381 Vifa-Chr2 1601316576 1601335023 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05381 1 674 Protein tyrosine phosphatase (PTP) family AT3G09100 68.824 0.0 929
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05381 K13917 - gmx:100776633 1224.54