Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05372 ATGTCTTCCCGGACTCCATTTTCCGGCGACGACGATGACGATATTGTTAACGACGATTTCTTAAACTTCCCATTCTTCGGTGTAAACCTCCCCGCCAGAATCAGCCGAAAATACGACGTGTTCTTGAGTTTCAGAGGCGAAGACACTCGCGCATCTTTCACTTCACATCTTTACGCCTCTCTTCAAAACGCCGGAATCATAGTTTTCAAAGACGATCAATCAATTCAAAGAGGAGATCAAATCCCAGAATCACTACTGCGAGGGATCGAAGATTCTGTGATTTCTATTATTGTGTTCTCCAGAAACTACGCGGATTCTCCGTGGTGTCTTCAGGAGTTGGTGAGAATAATGGAGTGTCGTAGAACTGTAGGTCAGGTGGTTCTTCCTGTGTTCTATGATATGTATCCGTCGGAAGTTCGGAGGCAGACAGGAGAGTTTGGTAAAGCTTTTCAAAGTCATTTGAAGAGATTTTCAACGGAGGATGAGTTGTGTATGGAACAAGGTTGGAGATTGGCGCTTCACGAGGCTGCTTGGCTTTCAGGGTTTGTTGTCCTCAATTCCAGGGATGAATGTGAGATTGTCAAGAGTATTGTTGCAAATGTTACACGTTTGCTAGACAAGACAGACTTGTTCATTGCTGATAATCCGGTTGGAGTAGAATCTCGAGTGCAAGATATGATTCAACTTCTAGACTCTCAACAATCCAATGATGTTCTACTACTAGGGATGTGGGGGATGGGTGGAATTGGTAAAACAACCATTGCAAAAGCCATCTTCAATAAAATTGGCCGCAATTTTGAAGGTAGGAGTTTTCTTGCAAATGTTAGAGAGGTTTGGGAGCAAGCTACTGGACCAACATATTTACAAGAACGACTTATGCATGATATTTTCAATGAAACAACCAAGATACAAAGCATTGAATTTGGAAAAAATATATTTAAGGAAAGACTTAGTAAGAAAAGAATACTTCTTATACTTGACGATGTAAATAAATTGGACCAACTAAATGCTTTGTGTGGAAATCGTAAATGGTTTTCTTTTGGGAGTAGAATAATCATCACAACAAGAGATAAGCATATACTTAGAGGGAATAGAGTTGACAAAATATACATGATGAAAGAAATGGATGAAAGGGAATCTCTTGAGCTTTTTAGTTGGCATGCATTCAAGCAAACAAGTCCCAAAGAAGATTTTTCTGAAATTTCAAGAAATGTAGTTAAGTATTCCGGGGGATTACCGCTAGCTCTTGAAGTCCTTGGGTCCTATTTATTTGATCGAGAGATATTAGAGTGGAATTGTGTATTGGAGAAACTCAAAAAAATTCCCAATGATCAAGTATATAAGAAGTTAAAAATAAGCTATGATGGTTTAAATGATGACACAGAGAAAGAAATATTCCTTGACATAGCTTGTTTCTTTATTGGAATGGACCGATATGATGTTATTCATATATTAAATGGTTGTGGACTTTTCGCAGAAATTGGAATATGTATCCTTATTGAGCGAAGCCTTGTAACGGTTGATGATAAGAACAAGCTTGGTATGCATGATTTGCTGCGAGATATGGGAAGAGAAATCATTCGGGAAAAGTCTCCAAAGAAGCCGGAGGAACGTAGCAGGTTGTGGTTTCACGAGGATGTGCTTGATGTATTATCCGAACATACTGGAACAATTGATGTTGAGGGACTGATTTTGAAGCTTCTAAGTCTTAGTGCACAATGTTTCAGTACTAAAGCATTTGAGAACATGAAGAGACTCAGATTGCTTCAACTTTCTGGTGCACAACTTGATGGAGATTTTAAATATCTTTCAAGAAATTTGAGATGGCTGTATTGGAAAGGATTTCATTTAACATGCATACCTTCAAACTTCTATCAAAGAAATTTAATTTCCCTTGAGTTAGAAAACAGCAATGTCAAACTTGTGTGGAAAGAGATGCAGATGATGGAGAAGCTGAAAATTCTCAATCTTAGTCATTCTCACTATCTGACACAGACCCCAGACTTTTCAAACTTGCCTAATCTTGAAAAGCTAGTACTCAAAGATTGTCCTAGGTTGTCTGAGGTATCCGATAGCATTGGACATCTCAATAAAGTTCTTCTGATAAATTTGAAAGACTGTATTGGCCTTCGTAATCTTCCAAGGAACATCTATACGTTGAAATCCCTGAAAACTCTCATTCTATCTGGATGTTTAATGATTGACAAGTTGGAAGAAGACTTTGAACAGATGGAATCTTTATCCACTCTGATGGCAGATAACACAGCTATAACAAAAGTTCCCTTTTCAATAGTAAGGTCAAAAAGCATTGGATACATTTCTTTGTGCGGATACAAAGGATTCTCGTGTGATGTGTTTCCTTCCATCATTCAGTCTTGGATGTCACCAATAAATAATCTCTCACCCCCTATTTTAACAACTACCGGCATGTCATCCCTTATTTCTTTAGGTTCATCCAGCAGCTGTTTCCACGATCTATCATCTATTACCATTTGCATTCCAAAGCTTCTAACCCTTTGGCTAGAGTGTGGATCAGAGTTTCAACTTTCACAAGACAAAACAAGAATTTTAAATGCTTTAAGTGCAACAAATTCTATAAAATTGGAATTGGAACACTCGATTGGAACTACGTCACAAATATCAGATGTGAAGACTTCATTGTTAATTGAATGTCAGAGTCAAGTGCATGTTTCAACATCGAGAAATTCCTTGAAGTCTCTTATAATTCAAATGGGAATGAATTGTCTAATCACCAACATTCTAAAAGAGAGGATCTTACAGAATTTGACAGTTGATGGATGTGATAATTTTTTGCTACCTGTTGATAAATACCCAGATTGGTTAACTTTCAATTCAGAAGGTTCTTCTGTAATTTTTGAAGTCCCTCAAGTGGAAGGTCATAGTTTGAAGACAATGATGTGCATTGTCTATTCTTCAAGCCCAGATGACGTAACAACAGATGGCCTTAAAAATGTGTTGGTGATTAATCACACAAAGGCCACCATTCAACTCTATAAGAGAGAGGCGTTATCGTCCTTTGGAAATGAGGAGTGGCAGAGAGTGGTATCAAGTATGGAAACTGGTGACAAAGTGGAGATTGTTGTCATTTTTGGGAACAGTTTCGTTGTGAAGAAGACAGCGATATATCTCATATATGGTGAACCATTCTGCGAAAAAACGGACCAATTTCATGCACCAGATAAGAGTGCTGTTGCTGGCGATCATGAAACTGATTGCGCTGCCAAGAGGGTCTCTCCTCAAGTAGAGCCCACAGATGATTTTAAACAAAGAGAGAAAAGAAGAAAACACTGCTTAAGAGAGACCTGCACCCTTGATGTTGAGTATAGGAGCATCTTGCTTAATGCATACATTGTTTCGTTCAACTTCATCCCTACTGCAGCTGGATTGGATTCGTCGGCTGTGCAGGTTTTACATGTCCAGAGAAAGAACCATTGTCCATTACCAAAGTCAAGGATTTTGAGACCTCTGCTACTGCATTACAACAATCGCAATTGCTTCACATCATGCCATTTACCCACAATTTTCTACAATATTGAAGATTGGATGTAA 3570 0.3843 MSSRTPFSGDDDDDIVNDDFLNFPFFGVNLPARISRKYDVFLSFRGEDTRASFTSHLYASLQNAGIIVFKDDQSIQRGDQIPESLLRGIEDSVISIIVFSRNYADSPWCLQELVRIMECRRTVGQVVLPVFYDMYPSEVRRQTGEFGKAFQSHLKRFSTEDELCMEQGWRLALHEAAWLSGFVVLNSRDECEIVKSIVANVTRLLDKTDLFIADNPVGVESRVQDMIQLLDSQQSNDVLLLGMWGMGGIGKTTIAKAIFNKIGRNFEGRSFLANVREVWEQATGPTYLQERLMHDIFNETTKIQSIEFGKNIFKERLSKKRILLILDDVNKLDQLNALCGNRKWFSFGSRIIITTRDKHILRGNRVDKIYMMKEMDERESLELFSWHAFKQTSPKEDFSEISRNVVKYSGGLPLALEVLGSYLFDREILEWNCVLEKLKKIPNDQVYKKLKISYDGLNDDTEKEIFLDIACFFIGMDRYDVIHILNGCGLFAEIGICILIERSLVTVDDKNKLGMHDLLRDMGREIIREKSPKKPEERSRLWFHEDVLDVLSEHTGTIDVEGLILKLLSLSAQCFSTKAFENMKRLRLLQLSGAQLDGDFKYLSRNLRWLYWKGFHLTCIPSNFYQRNLISLELENSNVKLVWKEMQMMEKLKILNLSHSHYLTQTPDFSNLPNLEKLVLKDCPRLSEVSDSIGHLNKVLLINLKDCIGLRNLPRNIYTLKSLKTLILSGCLMIDKLEEDFEQMESLSTLMADNTAITKVPFSIVRSKSIGYISLCGYKGFSCDVFPSIIQSWMSPINNLSPPILTTTGMSSLISLGSSSSCFHDLSSITICIPKLLTLWLECGSEFQLSQDKTRILNALSATNSIKLELEHSIGTTSQISDVKTSLLIECQSQVHVSTSRNSLKSLIIQMGMNCLITNILKERILQNLTVDGCDNFLLPVDKYPDWLTFNSEGSSVIFEVPQVEGHSLKTMMCIVYSSSPDDVTTDGLKNVLVINHTKATIQLYKREALSSFGNEEWQRVVSSMETGDKVEIVVIFGNSFVVKKTAIYLIYGEPFCEKTDQFHAPDKSAVAGDHETDCAAKRVSPQVEPTDDFKQREKRRKHCLRETCTLDVEYRSILLNAYIVSFNFIPTAAGLDSSAVQVLHVQRKNHCPLPKSRILRPLLLHYNNRNCFTSCHLPTIFYNIEDWM 1189
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05372 1189 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 38 860 IPR044974 GO:0006952
Vifa2g05372 1189 FunFam Disease resistance protein (TIR-NBS-LRR class) 34 207 - -
Vifa2g05372 1189 SUPERFAMILY L domain-like 565 910 - -
Vifa2g05372 1189 ProSiteProfiles TIR domain profile. 36 205 IPR000157 GO:0007165
Vifa2g05372 1189 Gene3D Ribonuclease Inhibitor 563 795 IPR032675 -
Vifa2g05372 1189 SUPERFAMILY "Winged helix" DNA-binding domain 445 551 IPR036390 -
Vifa2g05372 1189 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 469 IPR027417 -
Vifa2g05372 1189 SMART till_3 37 179 IPR000157 GO:0007165
Vifa2g05372 1189 Gene3D - 35 203 IPR035897 -
Vifa2g05372 1189 Pfam TIR domain 37 202 IPR000157 GO:0007165
Vifa2g05372 1189 SMART AAA_5 237 376 IPR003593 GO:0016887
Vifa2g05372 1189 PRINTS Disease resistance protein signature 409 423 - -
Vifa2g05372 1189 PRINTS Disease resistance protein signature 647 663 - -
Vifa2g05372 1189 PRINTS Disease resistance protein signature 240 255 - -
Vifa2g05372 1189 PRINTS Disease resistance protein signature 316 330 - -
Vifa2g05372 1189 Pfam NB-ARC domain 220 444 IPR002182 GO:0043531
Vifa2g05372 1189 Gene3D - 204 369 IPR027417 -
Vifa2g05372 1189 Gene3D - 374 458 IPR042197 -
Vifa2g05372 1189 SUPERFAMILY Toll/Interleukin receptor TIR domain 35 181 IPR035897 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa2g05372 Vifa-Chr2 1600395159 1600400651 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05372 35 764 WRKY Transcription Factor Family AT4G12020 32.620 1.50e-91 323
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05372 - - gmx:100808685 1449.11