LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g05372	ATGTCTTCCCGGACTCCATTTTCCGGCGACGACGATGACGATATTGTTAACGACGATTTCTTAAACTTCCCATTCTTCGGTGTAAACCTCCCCGCCAGAATCAGCCGAAAATACGACGTGTTCTTGAGTTTCAGAGGCGAAGACACTCGCGCATCTTTCACTTCACATCTTTACGCCTCTCTTCAAAACGCCGGAATCATAGTTTTCAAAGACGATCAATCAATTCAAAGAGGAGATCAAATCCCAGAATCACTACTGCGAGGGATCGAAGATTCTGTGATTTCTATTATTGTGTTCTCCAGAAACTACGCGGATTCTCCGTGGTGTCTTCAGGAGTTGGTGAGAATAATGGAGTGTCGTAGAACTGTAGGTCAGGTGGTTCTTCCTGTGTTCTATGATATGTATCCGTCGGAAGTTCGGAGGCAGACAGGAGAGTTTGGTAAAGCTTTTCAAAGTCATTTGAAGAGATTTTCAACGGAGGATGAGTTGTGTATGGAACAAGGTTGGAGATTGGCGCTTCACGAGGCTGCTTGGCTTTCAGGGTTTGTTGTCCTCAATTCCAGGGATGAATGTGAGATTGTCAAGAGTATTGTTGCAAATGTTACACGTTTGCTAGACAAGACAGACTTGTTCATTGCTGATAATCCGGTTGGAGTAGAATCTCGAGTGCAAGATATGATTCAACTTCTAGACTCTCAACAATCCAATGATGTTCTACTACTAGGGATGTGGGGGATGGGTGGAATTGGTAAAACAACCATTGCAAAAGCCATCTTCAATAAAATTGGCCGCAATTTTGAAGGTAGGAGTTTTCTTGCAAATGTTAGAGAGGTTTGGGAGCAAGCTACTGGACCAACATATTTACAAGAACGACTTATGCATGATATTTTCAATGAAACAACCAAGATACAAAGCATTGAATTTGGAAAAAATATATTTAAGGAAAGACTTAGTAAGAAAAGAATACTTCTTATACTTGACGATGTAAATAAATTGGACCAACTAAATGCTTTGTGTGGAAATCGTAAATGGTTTTCTTTTGGGAGTAGAATAATCATCACAACAAGAGATAAGCATATACTTAGAGGGAATAGAGTTGACAAAATATACATGATGAAAGAAATGGATGAAAGGGAATCTCTTGAGCTTTTTAGTTGGCATGCATTCAAGCAAACAAGTCCCAAAGAAGATTTTTCTGAAATTTCAAGAAATGTAGTTAAGTATTCCGGGGGATTACCGCTAGCTCTTGAAGTCCTTGGGTCCTATTTATTTGATCGAGAGATATTAGAGTGGAATTGTGTATTGGAGAAACTCAAAAAAATTCCCAATGATCAAGTATATAAGAAGTTAAAAATAAGCTATGATGGTTTAAATGATGACACAGAGAAAGAAATATTCCTTGACATAGCTTGTTTCTTTATTGGAATGGACCGATATGATGTTATTCATATATTAAATGGTTGTGGACTTTTCGCAGAAATTGGAATATGTATCCTTATTGAGCGAAGCCTTGTAACGGTTGATGATAAGAACAAGCTTGGTATGCATGATTTGCTGCGAGATATGGGAAGAGAAATCATTCGGGAAAAGTCTCCAAAGAAGCCGGAGGAACGTAGCAGGTTGTGGTTTCACGAGGATGTGCTTGATGTATTATCCGAACATACTGGAACAATTGATGTTGAGGGACTGATTTTGAAGCTTCTAAGTCTTAGTGCACAATGTTTCAGTACTAAAGCATTTGAGAACATGAAGAGACTCAGATTGCTTCAACTTTCTGGTGCACAACTTGATGGAGATTTTAAATATCTTTCAAGAAATTTGAGATGGCTGTATTGGAAAGGATTTCATTTAACATGCATACCTTCAAACTTCTATCAAAGAAATTTAATTTCCCTTGAGTTAGAAAACAGCAATGTCAAACTTGTGTGGAAAGAGATGCAGATGATGGAGAAGCTGAAAATTCTCAATCTTAGTCATTCTCACTATCTGACACAGACCCCAGACTTTTCAAACTTGCCTAATCTTGAAAAGCTAGTACTCAAAGATTGTCCTAGGTTGTCTGAGGTATCCGATAGCATTGGACATCTCAATAAAGTTCTTCTGATAAATTTGAAAGACTGTATTGGCCTTCGTAATCTTCCAAGGAACATCTATACGTTGAAATCCCTGAAAACTCTCATTCTATCTGGATGTTTAATGATTGACAAGTTGGAAGAAGACTTTGAACAGATGGAATCTTTATCCACTCTGATGGCAGATAACACAGCTATAACAAAAGTTCCCTTTTCAATAGTAAGGTCAAAAAGCATTGGATACATTTCTTTGTGCGGATACAAAGGATTCTCGTGTGATGTGTTTCCTTCCATCATTCAGTCTTGGATGTCACCAATAAATAATCTCTCACCCCCTATTTTAACAACTACCGGCATGTCATCCCTTATTTCTTTAGGTTCATCCAGCAGCTGTTTCCACGATCTATCATCTATTACCATTTGCATTCCAAAGCTTCTAACCCTTTGGCTAGAGTGTGGATCAGAGTTTCAACTTTCACAAGACAAAACAAGAATTTTAAATGCTTTAAGTGCAACAAATTCTATAAAATTGGAATTGGAACACTCGATTGGAACTACGTCACAAATATCAGATGTGAAGACTTCATTGTTAATTGAATGTCAGAGTCAAGTGCATGTTTCAACATCGAGAAATTCCTTGAAGTCTCTTATAATTCAAATGGGAATGAATTGTCTAATCACCAACATTCTAAAAGAGAGGATCTTACAGAATTTGACAGTTGATGGATGTGATAATTTTTTGCTACCTGTTGATAAATACCCAGATTGGTTAACTTTCAATTCAGAAGGTTCTTCTGTAATTTTTGAAGTCCCTCAAGTGGAAGGTCATAGTTTGAAGACAATGATGTGCATTGTCTATTCTTCAAGCCCAGATGACGTAACAACAGATGGCCTTAAAAATGTGTTGGTGATTAATCACACAAAGGCCACCATTCAACTCTATAAGAGAGAGGCGTTATCGTCCTTTGGAAATGAGGAGTGGCAGAGAGTGGTATCAAGTATGGAAACTGGTGACAAAGTGGAGATTGTTGTCATTTTTGGGAACAGTTTCGTTGTGAAGAAGACAGCGATATATCTCATATATGGTGAACCATTCTGCGAAAAAACGGACCAATTTCATGCACCAGATAAGAGTGCTGTTGCTGGCGATCATGAAACTGATTGCGCTGCCAAGAGGGTCTCTCCTCAAGTAGAGCCCACAGATGATTTTAAACAAAGAGAGAAAAGAAGAAAACACTGCTTAAGAGAGACCTGCACCCTTGATGTTGAGTATAGGAGCATCTTGCTTAATGCATACATTGTTTCGTTCAACTTCATCCCTACTGCAGCTGGATTGGATTCGTCGGCTGTGCAGGTTTTACATGTCCAGAGAAAGAACCATTGTCCATTACCAAAGTCAAGGATTTTGAGACCTCTGCTACTGCATTACAACAATCGCAATTGCTTCACATCATGCCATTTACCCACAATTTTCTACAATATTGAAGATTGGATGTAA	3570	0.3843	MSSRTPFSGDDDDDIVNDDFLNFPFFGVNLPARISRKYDVFLSFRGEDTRASFTSHLYASLQNAGIIVFKDDQSIQRGDQIPESLLRGIEDSVISIIVFSRNYADSPWCLQELVRIMECRRTVGQVVLPVFYDMYPSEVRRQTGEFGKAFQSHLKRFSTEDELCMEQGWRLALHEAAWLSGFVVLNSRDECEIVKSIVANVTRLLDKTDLFIADNPVGVESRVQDMIQLLDSQQSNDVLLLGMWGMGGIGKTTIAKAIFNKIGRNFEGRSFLANVREVWEQATGPTYLQERLMHDIFNETTKIQSIEFGKNIFKERLSKKRILLILDDVNKLDQLNALCGNRKWFSFGSRIIITTRDKHILRGNRVDKIYMMKEMDERESLELFSWHAFKQTSPKEDFSEISRNVVKYSGGLPLALEVLGSYLFDREILEWNCVLEKLKKIPNDQVYKKLKISYDGLNDDTEKEIFLDIACFFIGMDRYDVIHILNGCGLFAEIGICILIERSLVTVDDKNKLGMHDLLRDMGREIIREKSPKKPEERSRLWFHEDVLDVLSEHTGTIDVEGLILKLLSLSAQCFSTKAFENMKRLRLLQLSGAQLDGDFKYLSRNLRWLYWKGFHLTCIPSNFYQRNLISLELENSNVKLVWKEMQMMEKLKILNLSHSHYLTQTPDFSNLPNLEKLVLKDCPRLSEVSDSIGHLNKVLLINLKDCIGLRNLPRNIYTLKSLKTLILSGCLMIDKLEEDFEQMESLSTLMADNTAITKVPFSIVRSKSIGYISLCGYKGFSCDVFPSIIQSWMSPINNLSPPILTTTGMSSLISLGSSSSCFHDLSSITICIPKLLTLWLECGSEFQLSQDKTRILNALSATNSIKLELEHSIGTTSQISDVKTSLLIECQSQVHVSTSRNSLKSLIIQMGMNCLITNILKERILQNLTVDGCDNFLLPVDKYPDWLTFNSEGSSVIFEVPQVEGHSLKTMMCIVYSSSPDDVTTDGLKNVLVINHTKATIQLYKREALSSFGNEEWQRVVSSMETGDKVEIVVIFGNSFVVKKTAIYLIYGEPFCEKTDQFHAPDKSAVAGDHETDCAAKRVSPQVEPTDDFKQREKRRKHCLRETCTLDVEYRSILLNAYIVSFNFIPTAAGLDSSAVQVLHVQRKNHCPLPKSRILRPLLLHYNNRNCFTSCHLPTIFYNIEDWM	1189

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g05372	1189	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	38	860	IPR044974	GO:0006952
	Vifa2g05372	1189	FunFam	Disease resistance protein (TIR-NBS-LRR class)	34	207	-	-
	Vifa2g05372	1189	SUPERFAMILY	L domain-like	565	910	-	-
	Vifa2g05372	1189	ProSiteProfiles	TIR domain profile.	36	205	IPR000157	GO:0007165
	Vifa2g05372	1189	Gene3D	Ribonuclease Inhibitor	563	795	IPR032675	-
	Vifa2g05372	1189	SUPERFAMILY	"Winged helix" DNA-binding domain	445	551	IPR036390	-
	Vifa2g05372	1189	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	206	469	IPR027417	-
	Vifa2g05372	1189	SMART	till_3	37	179	IPR000157	GO:0007165
	Vifa2g05372	1189	Gene3D	-	35	203	IPR035897	-
	Vifa2g05372	1189	Pfam	TIR domain	37	202	IPR000157	GO:0007165
	Vifa2g05372	1189	SMART	AAA_5	237	376	IPR003593	GO:0016887
	Vifa2g05372	1189	PRINTS	Disease resistance protein signature	409	423	-	-
	Vifa2g05372	1189	PRINTS	Disease resistance protein signature	647	663	-	-
	Vifa2g05372	1189	PRINTS	Disease resistance protein signature	240	255	-	-
	Vifa2g05372	1189	PRINTS	Disease resistance protein signature	316	330	-	-
	Vifa2g05372	1189	Pfam	NB-ARC domain	220	444	IPR002182	GO:0043531
	Vifa2g05372	1189	Gene3D	-	204	369	IPR027417	-
	Vifa2g05372	1189	Gene3D	-	374	458	IPR042197	-
	Vifa2g05372	1189	SUPERFAMILY	Toll/Interleukin receptor TIR domain	35	181	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g05372	Vifa-Chr2	1600395159	1600400651	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g05372	35	764	WRKY Transcription Factor Family	AT4G12020	32.620	1.50e-91	323

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g05372	-		-	gmx:100808685	1449.11