Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05371 ATGTATGTAAATGTACCATTTCTTTGCTTTTTTTATAGGTATGAATGTGAGATTGTCAAGAGTATTGTTGCAAATGTTACACGTTTGCTGGACAAGACAGACTTGTTCATTGCTGATAATCCGGTTGGAGTAGAATCTCGAGTGCAAGATATGATTCAACTTCTAGACTCTCAACAATCCAATGATGTTCTACTACTAGGGATGTGGGGGATGGGTGGAATTGGTAAAACAACCATTGCAAAAGCCATCTTCAACAAAATTGGCCGCAATTTTGAAGGTAGGAGTTTTCTTGCAAATGTTAGAGAGGTTTGGGAGCAAGCTACCGGACCAACATATTTACAAGAACGACTTATGCATGATATTTTCAATGAAACAACCAAGATACAAAGCATTGAGTTTGGAAAAAATATATTTAAGGAAAGACTTCGTAAGAAAAGAATACTTCTCATACTTGACGATGTAAATAAATTGGACCAACTAAATGCTTTGTGTGGAAATCGTAAATGGTTTTCTTTTGGGAGTAGAATAATCATCACAACAAGAGATAAGCATATACTTAGAGGGAATAGAGTTGACAAAATATACATGATGAAAGAAATGGATGAAAGGGAATCTCTTGAGCTTTTTAGTTGGCATGCATTCAAGCAAACAAGTCCCAAAGAAGATTTTTCTGAAATTTCAAGAAATGTAGTTAAGTATTCCGGGGGATTACCGCTAGCTCTTGAAGTCCTTGGGTCCTATTTATTTGATCGAGAGATATTAGAGTGGAATTGTGTATTGGAGAAACTCAAAAAAATTCCCAATGATCAAGTATATAAGAAGTTAAAAATAAGCTATGATGGTTTAAATGATGATACAGAGAAAGAAATATTCCTTGACATAGCTTGTTTCTTTATTGGAATGGACCGATATGATGTTATTCATATATTAAATGGTTGTGGACTTTTCGCAGAAATTGGAATATGTATCCTTATTGAGCGAAGCCTTGTAACAGTTGATGATAAGAACAAGCTTGGCATGCATGATTTGTTGCGAGATATGGGAAGAGAAATCATTCGGGAAAAGTCTCCAAAGAAGCCGGAGGAACGTAGCAGGTTGTGGTTTCACGAGGATGTGATTGATGTATTATCAGAACATACTGGAACAATTGATGTTGAGGGACTGATTTTGAAGCTTCTAAGTCTTAGTGCACAATGTTTCAGTACTAAAGCATTTGAGAACATGAAGAGACTCAGATTGCTTCAACTTTCTGGTGCACAACTTGATGGAGATTTTAAATATCTTTCAAGAAATTTGAGATGGCTGTATTGGAAAGGATTTCCTTTAACATGCATACCTTCAAACTTCTATCAAAGAAATTTAATTTCCCTTGAGTTAGAAAACAGCAATGTCAAACTTGTGTGGAAAGAGATGCAGATGATGGAGAAGCTGAAAATTCTCAATCTTAGTCATTCTCACTATCTGACACAGACCCCAGACTTTTCAAACTTGCCTAATCTTGAAAAGCTAGTACTCAAAGATTGTCCTAGGTTGTCTGAGGTATCCGATAGTGTTGGACATCTCAATAAAGTTCTTCTGATAAATTTGAAAGACTGTATTGGCCTTCGTAATCTTCCAAGGAACATCTATACGTTGAAATCCCTGAAAACTCTCATTCTATCTGGATGTTTAATGATTGACAAGTTGGAAGAAGACTTTGAACAGATGGAATCTTTATCCACTCTGATGGCAGATAACACAGCTATAACAAAAGTTCCCTTTTCAATAGTAAGGTCAAAAAGCATTGGATACATTTCTTTGTGCGGATACAAAGGATTCTCGTGTGATGTGTTTCCTTCCATTATTCAGTCTTGGATGTCACCAATAAATAATCTCTCACCCCCTATTTTAACAACAACTACCGGCATGTCATCCCTTATTTCTTTAGGTTCATCCAGCAGCTGTTTCCACGATCTATCATCTATTACCATTTCCATTCCAAAGCTTCTAACCCTTTGGCTAGAGTGTGGATCAGAGTTTCAACTTTCACAAGACAAAACAAGAATTTTAAATGCTTTAAGTGCAACAAATTCTATAAAATTGGAATTGGAACACTCGATTGGAACTACGTCACAAATATCAGATGTGAAGACTTCGTTGTTAATTGAATGTCAGAGTCAAGTGCATGTTTCAACATCGAGAAATTCCTTGAAGTCTCTTATAATTCAAATGGGAATGAATTGTCTAATCACCAACATTCTAAAAGAGAGGATCTTACAGAATTTGACAGTTGATGGATGTGATAATTTTTTGCTACCTGTTGATAAATACCCAGATTGGTTAACTTTCAATTCAGAAGGTTCTTCTGTAATTTTTGAAGTCCCTCAAGTGGAAGGTCATAGTTTGAAGACAATGATGTGCATTGTCTATTCTTCAAGCCCAGATGACGTAACAACAGATGGCCTTAAAAATGTGTTGGTGATTAATCACACAAAGGCCACCATTCAACTCTATAAGAGAGAGGCGTTATCGTCCTTTGGAAATGAGGAGTGGCAGAGAGTGGTATCAAGTATGGAAACTGGTGACAAAGTGGAGATTGTTGTCATTTTTGGGAACAGTTTCGTTGTGAAGAAGACAGCGATATATCTCATATATGGTGAACCATTCTGCGAAAAAACGGACCAATTTCATGCACCAGATAAGAATGCTGTTGCTGGTGATCATGAAACTGATTGTGCTGCCAAGAGGGTCTCTCCTCAAGTAGAGCCCACCGATGATTTTAAACAAAGAGAGAAAAGAAGAAAACACTGCTTAAGAGAGACCTGCACCCTTGATGTTGAGTATAGGAGCATCTTGCTTAATGCATACATTGTTTCGTTCAACTTCATCCCTACTGCAGCTGGATTGGATTCGTCGGCTGCAGGTTTTACATGCCCAGGTCTACAAACCAATAAACTGCGAGAGAGACTCCTATTGGACATGTGCTAG 2967 0.3714 MYVNVPFLCFFYRYECEIVKSIVANVTRLLDKTDLFIADNPVGVESRVQDMIQLLDSQQSNDVLLLGMWGMGGIGKTTIAKAIFNKIGRNFEGRSFLANVREVWEQATGPTYLQERLMHDIFNETTKIQSIEFGKNIFKERLRKKRILLILDDVNKLDQLNALCGNRKWFSFGSRIIITTRDKHILRGNRVDKIYMMKEMDERESLELFSWHAFKQTSPKEDFSEISRNVVKYSGGLPLALEVLGSYLFDREILEWNCVLEKLKKIPNDQVYKKLKISYDGLNDDTEKEIFLDIACFFIGMDRYDVIHILNGCGLFAEIGICILIERSLVTVDDKNKLGMHDLLRDMGREIIREKSPKKPEERSRLWFHEDVIDVLSEHTGTIDVEGLILKLLSLSAQCFSTKAFENMKRLRLLQLSGAQLDGDFKYLSRNLRWLYWKGFPLTCIPSNFYQRNLISLELENSNVKLVWKEMQMMEKLKILNLSHSHYLTQTPDFSNLPNLEKLVLKDCPRLSEVSDSVGHLNKVLLINLKDCIGLRNLPRNIYTLKSLKTLILSGCLMIDKLEEDFEQMESLSTLMADNTAITKVPFSIVRSKSIGYISLCGYKGFSCDVFPSIIQSWMSPINNLSPPILTTTTGMSSLISLGSSSSCFHDLSSITISIPKLLTLWLECGSEFQLSQDKTRILNALSATNSIKLELEHSIGTTSQISDVKTSLLIECQSQVHVSTSRNSLKSLIIQMGMNCLITNILKERILQNLTVDGCDNFLLPVDKYPDWLTFNSEGSSVIFEVPQVEGHSLKTMMCIVYSSSPDDVTTDGLKNVLVINHTKATIQLYKREALSSFGNEEWQRVVSSMETGDKVEIVVIFGNSFVVKKTAIYLIYGEPFCEKTDQFHAPDKNAVAGDHETDCAAKRVSPQVEPTDDFKQREKRRKHCLRETCTLDVEYRSILLNAYIVSFNFIPTAAGLDSSAAGFTCPGLQTNKLRERLLLDMC 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05371 988 Gene3D Ribonuclease Inhibitor 384 626 IPR032675 -
Vifa2g05371 988 Pfam NB-ARC domain 45 269 IPR002182 GO:0043531
Vifa2g05371 988 SMART AAA_5 62 201 IPR003593 GO:0016887
Vifa2g05371 988 Gene3D - 27 194 IPR027417 -
Vifa2g05371 988 Gene3D - 199 283 IPR042197 -
Vifa2g05371 988 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 698 IPR044974 GO:0006952
Vifa2g05371 988 PRINTS Disease resistance protein signature 141 155 - -
Vifa2g05371 988 PRINTS Disease resistance protein signature 65 80 - -
Vifa2g05371 988 PRINTS Disease resistance protein signature 472 488 - -
Vifa2g05371 988 PRINTS Disease resistance protein signature 234 248 - -
Vifa2g05371 988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 294 IPR027417 -
Vifa2g05371 988 SUPERFAMILY L domain-like 390 736 - -
Vifa2g05371 988 SUPERFAMILY "Winged helix" DNA-binding domain 270 376 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05371 Vifa-Chr2 1600373550 1600377908 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05371 3 589 WRKY Transcription Factor Family AT4G12020 33.609 1.52e-80 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05371 - - gmx:100808685 1249.57