Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05368 ATGCCTTCATCTTCCACAACCACAGTTTCAAAATGCATTATCTACCCAAACCAAAAATCCTCCATAAAACCCTTAAAACTCTCTGTCTCTGATCTTCCCATGCTCTCATGCCACTACATCCAAAAGGGAATTCTACTTTCCGCACCCCCATATTCCTCTGAAAACCTAATCCACACCCTCAAAAACTCTCTATCCATCACTCTCTCCCACTTCCCTCCCCTCGCCGGCCGACTCACCACCGACTCCGACGGTTACATTTACATCACCTCCAACGACGCCGGCGTCGATTTCGTTCACGCAAAAGCCAAACACCTCACACTAAACACCGTCCTCTCACCTTCTCTCATAGACGTCCATCCCTGTTTCAAGGAGTTTTTCGCTTACGACTTACCGGTCTCTTACTCCGGCCATAACACCCCCCTCGCCGCCATCCAAGTCACCGAACTCGCCGACGGTGTTTTCATCGGTTGCACGATCAACCATTCCGTAACCGACGGAACTTCCTTCTGGCACTTCTTCAACACATTCGCCGCCGTCACAAAATCCACTTCCGCCGCTGTCAAGATCTCTAAATCACCTGATTTCACCCGCGACACAGTCTTCAACTCCACCGCCGTCCTCCCTATACCCACAGGCGGCCCCGCCGTCACTTTTGACGTCGACGAGCCCATCCGTGAACGCGTCTTCCATTTCTCTCGTGAATCCATTCTCAAACTCAAAAACAAAGCAAACAATAACAGTAACGGTTTAACAGATCCAACTGAATTCATTGGAAAGCAAGCAAACGACGGTTGGAAAAACGTTAACTCTAACGTTAACGGAACTCTTAACGGAAAAACAAACTACAGAAACGAGATCTCGTCGTTTCAGTCGTTAAGTGCACAACTATGGCGATCAGTGACACGTGCGCGAAAACTAGATTTATCCAAAACGTCGACATTTCGTATGGCTGTGAATTGTCGTCACAGGTTAAACCCAAAAATGGACGCGTTTTATTTCGGTAACGCGATACAGAGCATCCCAACAGTTGCTTCGGTGAAAGATATAATATCGAACGATCTAAAATTCTGCGCTGAGCTTCTACACAAAAACGTCGTCGTATACGATGACGCTACGGTGCGCCGCGGAATAGAGGATTGGGAGAGTAATCCTAGGTTGTTTCCGCTTGGGAATTTCGATGGAGCTATGATAACTATGGGAAGTTCACCTCGTTTTCCTATGTATGATAATGATTTTGGTTGGGGGAAGCCTTTGGCGATTCGGAGTGGAAAGACGAATAAATTTGATGGGAAAATTTCTGCTTTTCCGGGGAGAGATGAAAATGGAAGTGTTGATCTTGAAGTTGTTTTGGCACCTAAGACTATGGCTGGACTTGAAAATGACATGGAGTTTATGCAGTATGTTACAGAAGTGTAG 1416 0.4668 MPSSSTTTVSKCIIYPNQKSSIKPLKLSVSDLPMLSCHYIQKGILLSAPPYSSENLIHTLKNSLSITLSHFPPLAGRLTTDSDGYIYITSNDAGVDFVHAKAKHLTLNTVLSPSLIDVHPCFKEFFAYDLPVSYSGHNTPLAAIQVTELADGVFIGCTINHSVTDGTSFWHFFNTFAAVTKSTSAAVKISKSPDFTRDTVFNSTAVLPIPTGGPAVTFDVDEPIRERVFHFSRESILKLKNKANNNSNGLTDPTEFIGKQANDGWKNVNSNVNGTLNGKTNYRNEISSFQSLSAQLWRSVTRARKLDLSKTSTFRMAVNCRHRLNPKMDAFYFGNAIQSIPTVASVKDIISNDLKFCAELLHKNVVVYDDATVRRGIEDWESNPRLFPLGNFDGAMITMGSSPRFPMYDNDFGWGKPLAIRSGKTNKFDGKISAFPGRDENGSVDLEVVLAPKTMAGLENDMEFMQYVTEV 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05368 471 Gene3D - 222 465 IPR023213 -
Vifa2g05368 471 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 466 - -
Vifa2g05368 471 Pfam Transferase family 7 465 - -
Vifa2g05368 471 Gene3D - 7 207 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05368 Vifa-Chr2 1599466114 1599467601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05368 58 460 Monolignol Biosynthesis Gene Families AT5G48930 26.683 5.51e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05368 - - gmx:100780358 751.51